Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq4392 154 2e-35
seq1058 154 2e-35
seq961 150 3e-34
seq4089 104 4e-20
>seq4392
Length=38752
Score = 154 bits (170), Expect = 2e-35
Identities = 179/229 (78%), Gaps = 13/229 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| |
Sbjct 4671 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 4614
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118
| ||| | | |||| || || | | ||||| | || || || | |||| | |
Sbjct 4613 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 4557
Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
| |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||||
Sbjct 4556 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 4500
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| |||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 4499 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 4452
>seq1058
Length=23677
Score = 154 bits (170), Expect = 2e-35
Identities = 179/229 (78%), Gaps = 13/229 (6%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| |
Sbjct 13 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 70
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118
| ||| | | |||| || || | | ||||| | || || || | |||| | |
Sbjct 71 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 127
Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
| |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||||
Sbjct 128 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 184
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| |||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 185 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 232
>seq961
Length=2017
Score = 150 bits (166), Expect = 3e-34
Identities = 178/229 (78%), Gaps = 13/229 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|| ||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| |
Sbjct 1962 GTCCAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 1905
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118
| ||| | | |||| || || | | ||||| | || || || | |||| | |
Sbjct 1904 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 1848
Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176
| |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||||
Sbjct 1847 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 1791
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| |||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 1790 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 1743
>seq4089
Length=19780
Score = 104 bits (114), Expect = 4e-20
Identities = 164/228 (72%), Gaps = 24/228 (11%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||| |||| | || ||||| || ||||||| | |||||| |||||| |
Sbjct 2133 GTACAAAGGGCAGGGGCGTAATTAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 2076
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118
| ||| | | |||| || || | | ||||| | || || || | |||| | |
Sbjct 2075 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 2019
Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
| ||||||| || | || | ||| ||| ||| |||||||||||||
Sbjct 2018 TTACCCGGATCTCTAGGTCTAGGA-----ACTT----------TCATTGTAGCGCGCGTG 1974
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
| |||||| |||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1973 CAGCCCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCT 1927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751965104850
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |