Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq4392 125 3e-26
seq1715 123 1e-25
seq2812 120 1e-24
seq2193 120 1e-24
seq101 120 1e-24
seq715 116 2e-23
>seq4392
Length=38752
Score = 125 bits (138), Expect = 3e-26
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| |
Sbjct 7029 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 7088
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||
Sbjct 7089 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 7148
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 7149 TAGGGGCGA 7157
Score = 120 bits (132), Expect = 1e-24
Identities = 119/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| ||||||
Sbjct 6330 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 6389
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| | ||||||||||| ||||||| |||| ||||| ||||||| ||| || |
Sbjct 6390 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 6449
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193
||||||||||| || |||||||| || | | |||
Sbjct 6450 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 6483
>seq1715
Length=781
Score = 123 bits (136), Expect = 1e-25
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615
|||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| ||
Sbjct 781 AGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGGG 722
Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675
|||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||||
Sbjct 721 AAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTAT 662
Query 676 AGGGGCGA 683
||||||||
Sbjct 661 AGGGGCGA 654
>seq2812
Length=46463
Score = 120 bits (132), Expect = 1e-24
Identities = 104/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||| || || || |||||||||||||||||||||| | ||| ||| ||||| ||| |
Sbjct 23224 GAGCCTATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 23283
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||
Sbjct 23284 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 23343
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 23344 TAGGGGCGA 23352
>seq2193
Length=45136
Score = 120 bits (132), Expect = 1e-24
Identities = 119/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| ||||||
Sbjct 20366 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 20307
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
|| | ||||||||||| ||||||| |||| ||||| ||||||| ||| || |
Sbjct 20306 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 20247
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193
||||||||||| || |||||||| || | | |||
Sbjct 20246 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 20213
Score = 116 bits (128), Expect = 2e-23
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| || || |||| ||||||||||||||||| | ||| ||| ||||| ||| |
Sbjct 10359 GAGCATATATGCTGTGACCTGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 10300
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| |||||||||| || |||| | ||| |||
Sbjct 10299 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCAATTGTCAGAATTGAGTA 10240
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 10239 TAGGGGCGA 10231
Score = 116 bits (128), Expect = 2e-23
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||| || || || |||||||||||||||||||||| | ||| ||| ||||| ||| |
Sbjct 14367 GAGCCTATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 14426
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| ||| ||||||||| |||| | ||| |||
Sbjct 14427 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTTCAAATCGATTGTCAGAATTGAGTA 14486
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 14487 TAGGGGCGA 14495
Score = 116 bits (128), Expect = 2e-23
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||| || || || |||||||||||||||||||||| | || ||| ||||| ||| |
Sbjct 19664 GAGCCTATATGATGTGACCCGAAAGATGGTGAACTATACTTGTTCAGGTTGAAGTCAGGG 19605
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||
Sbjct 19604 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 19545
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 19544 TAGGGGCGA 19536
>seq101
Length=15111
Score = 120 bits (132), Expect = 1e-24
Identities = 104/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| |
Sbjct 3426 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 3485
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| || | | |||||| ||||||||||||| |||| | ||| |||
Sbjct 3486 GAAACCCTGATGGAACACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 3545
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 3546 TAGGGGCGA 3554
>seq715
Length=1306
Score = 116 bits (128), Expect = 2e-23
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||| || || || |||||||||||||||||||||| | || ||| ||||| ||| |
Sbjct 421 GAGCCTATATGATGTGACCCGAAAGATGGTGAACTATACTTGTTCAGGTTGAAGTCAGGG 362
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||
Sbjct 361 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 302
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 301 TAGGGGCGA 293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079897254500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |