Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4392 125 3e-26 seq1715 123 1e-25 seq2812 120 1e-24 seq2193 120 1e-24 seq101 120 1e-24 seq715 116 2e-23 >seq4392 Length=38752 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 7029 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 7088 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 7089 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 7148 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 7149 TAGGGGCGA 7157 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 6330 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 6389 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 6390 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 6449 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 6450 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 6483 >seq1715 Length=781 Score = 123 bits (136), Expect = 1e-25 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 |||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| || Sbjct 781 AGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGGG 722 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||| Sbjct 721 AAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTAT 662 Query 676 AGGGGCGA 683 |||||||| Sbjct 661 AGGGGCGA 654 >seq2812 Length=46463 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 23224 GAGCCTATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 23283 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 23284 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 23343 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 23344 TAGGGGCGA 23352 >seq2193 Length=45136 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 20366 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 20307 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 20306 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 20247 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 20246 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 20213 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||| ||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 10359 GAGCATATATGCTGTGACCTGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 10300 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| |||||||||| || |||| | ||| ||| Sbjct 10299 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCAATTGTCAGAATTGAGTA 10240 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 10239 TAGGGGCGA 10231 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 14367 GAGCCTATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 14426 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||| ||||||||| |||| | ||| ||| Sbjct 14427 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTTCAAATCGATTGTCAGAATTGAGTA 14486 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 14487 TAGGGGCGA 14495 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || || |||||||||||||||||||||| | || ||| ||||| ||| | Sbjct 19664 GAGCCTATATGATGTGACCCGAAAGATGGTGAACTATACTTGTTCAGGTTGAAGTCAGGG 19605 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 19604 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 19545 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 19544 TAGGGGCGA 19536 >seq101 Length=15111 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 3426 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 3485 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 3486 GAAACCCTGATGGAACACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 3545 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 3546 TAGGGGCGA 3554 >seq715 Length=1306 Score = 116 bits (128), Expect = 2e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| || || || |||||||||||||||||||||| | || ||| ||||| ||| | Sbjct 421 GAGCCTATATGATGTGACCCGAAAGATGGTGAACTATACTTGTTCAGGTTGAAGTCAGGG 362 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 361 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 302 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 301 TAGGGGCGA 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079897254500