Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1058 167 4e-39 seq4392 163 5e-38 seq4089 163 5e-38 seq961 102 1e-19 seq2293 89.7 8e-16 >seq1058 Length=23677 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 417 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 476 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 477 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 516 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 169 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 227 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 228 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 271 >seq4392 Length=38752 Score = 163 bits (180), Expect = 5e-38 Identities = 96/100 (96%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 4267 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAGCTAAGAACGGCCATGC 4208 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 4207 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 4168 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 4515 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 4457 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 4456 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 4413 >seq4089 Length=19780 Score = 163 bits (180), Expect = 5e-38 Identities = 96/100 (96%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1742 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 1683 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 1682 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 1643 Score = 96.9 bits (106), Expect = 6e-18 Identities = 87/106 (82%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||| ||| Sbjct 1990 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTC 1932 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 1931 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 1888 >seq961 Length=2017 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 1806 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1748 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 1747 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 1704 >seq2293 Length=743 Score = 89.7 bits (98), Expect = 8e-16 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 743 AAGAACGGCCATGCACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796763025990