Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 167 4e-39
seq4392 163 5e-38
seq4089 163 5e-38
seq961 102 1e-19
seq2293 89.7 8e-16
>seq1058
Length=23677
Score = 167 bits (184), Expect = 4e-39
Identities = 97/100 (97%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 476
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| || |||||||||||||||||||||
Sbjct 477 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 516
Score = 102 bits (112), Expect = 1e-19
Identities = 88/106 (83%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 169 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 227
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | |||| | |||||||| ||
Sbjct 228 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 271
>seq4392
Length=38752
Score = 163 bits (180), Expect = 5e-38
Identities = 96/100 (96%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 4267 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAGCTAAGAACGGCCATGC 4208
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| || |||||||||||||||||||||
Sbjct 4207 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 4168
Score = 102 bits (112), Expect = 1e-19
Identities = 88/106 (83%), Gaps = 5/106 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 4515 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 4457
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | |||| | |||||||| ||
Sbjct 4456 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 4413
>seq4089
Length=19780
Score = 163 bits (180), Expect = 5e-38
Identities = 96/100 (96%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1742 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACGGCCATGC 1683
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| || |||||||||||||||||||||
Sbjct 1682 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 1643
Score = 96.9 bits (106), Expect = 6e-18
Identities = 87/106 (82%), Gaps = 5/106 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||
Sbjct 1990 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTC 1932
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | |||| | |||||||| ||
Sbjct 1931 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 1888
>seq961
Length=2017
Score = 102 bits (112), Expect = 1e-19
Identities = 88/106 (83%), Gaps = 5/106 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 1806 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1748
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | |||| | |||||||| ||
Sbjct 1747 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 1704
>seq2293
Length=743
Score = 89.7 bits (98), Expect = 8e-16
Identities = 52/54 (96%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 743 AAGAACGGCCATGCACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796763025990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |