Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq3783 295 1e-77
seq1058 295 1e-77
>seq3783
Length=876
Score = 295 bits (326), Expect = 1e-77
Identities = 214/244 (88%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 176 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 235
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 236 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 294
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 295 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 354
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268
||| |||||||||||||| ||||||| | | ||| || | | ||||||||||||
Sbjct 355 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 413
Query 269 GGCC 272
||||
Sbjct 414 GGCC 417
>seq1058
Length=23677
Score = 295 bits (326), Expect = 1e-77
Identities = 214/244 (88%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5332 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 5391
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 5392 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 5450
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 5451 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 5510
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268
||| |||||||||||||| ||||||| | | ||| || | | ||||||||||||
Sbjct 5511 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 5569
Query 269 GGCC 272
||||
Sbjct 5570 GGCC 5573
Score = 295 bits (326), Expect = 1e-77
Identities = 214/244 (88%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6641 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 6700
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 6701 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 6759
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 6760 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 6819
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268
||| |||||||||||||| ||||||| | | ||| || | | ||||||||||||
Sbjct 6820 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 6878
Query 269 GGCC 272
||||
Sbjct 6879 GGCC 6882
Score = 295 bits (326), Expect = 1e-77
Identities = 214/244 (88%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 9082 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 9141
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||
Sbjct 9142 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 9200
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 9201 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 9260
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268
||| |||||||||||||| ||||||| | | ||| || | | ||||||||||||
Sbjct 9261 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 9319
Query 269 GGCC 272
||||
Sbjct 9320 GGCC 9323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854359074240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |