Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq4392 163 5e-38
seq1058 163 5e-38
seq961 159 7e-37
seq4089 116 7e-24
>seq4392
Length=38752
Score = 163 bits (180), Expect = 5e-38
Identities = 172/223 (77%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 4452 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 4510
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 4511 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 4568
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 4569 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 4627
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| ||||||||||||||||||||||||
Sbjct 4628 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 4670
>seq1058
Length=23677
Score = 163 bits (180), Expect = 5e-38
Identities = 172/223 (77%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 232 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 174
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 173 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 116
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 115 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 57
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| ||||||||||||||||||||||||
Sbjct 56 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 14
>seq961
Length=2017
Score = 159 bits (176), Expect = 7e-37
Identities = 170/221 (77%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1743 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 1801
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| || ||||| || || ||| | ||| ||||| |||||| | | || |
Sbjct 1802 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 1859
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 1860 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 1918
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326
| | ||||| | | ||| ||||||||||||||||||||||
Sbjct 1919 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTG 1959
>seq4089
Length=19780
Score = 116 bits (128), Expect = 7e-24
Identities = 160/223 (72%), Gaps = 17/223 (8%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||
Sbjct 1927 AGATTGAG-CAATAACAGGTCTGTGATGTCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 1985
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| ||| |||| ||| | || || || |||||| | | || |
Sbjct 1986 AATGA----------AAGTT-----CCTAGACCTAGAGATCCGGGTAAACCGCTGAACCA 2030
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| || |||| ||||| | | | || || | || | | | ||| ||||| || ||||||
Sbjct 2031 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 2089
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| | ||||| | | ||| || |||||| ||||||||||||||
Sbjct 2090 TGTGAGTCATTAACTCGCATTAATTACGCCCCTGCCCTTTGTA 2132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947154629120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |