Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1058 286 1e-74 seq2663 165 3e-38 seq4596 156 1e-35 seq4377 145 2e-32 seq101 141 3e-31 seq378 129 2e-27 seq3679 107 6e-21 seq3783 89.7 2e-15 >seq1058 Length=23677 Score = 286 bits (316), Expect = 1e-74 Identities = 227/274 (83%), Gaps = 13/274 (5%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | || | Sbjct 9685 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAC 9744 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | ||||||||||| |||||||||| | ||| | ||| | | Sbjct 9745 CAAACCGAAATCTAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 9804 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 9805 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 9864 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 9865 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATG 9924 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||| Sbjct 9925 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 9958 Score = 187 bits (206), Expect = 8e-45 Identities = 175/224 (78%), Gaps = 13/224 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | || | Sbjct 7242 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAC 7301 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | ||||||||||| |||||||||| | ||| | ||| | | Sbjct 7302 CAAACCGAAATCTAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 7361 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 7362 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 7421 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 ||||||||||||||||||||||||||||||||||| |||||| Sbjct 7422 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAATGAATCT 7465 Score = 116 bits (128), Expect = 1e-23 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 16699 AGTAGATAGGGACAGTAGGAATCTCGATAATCCATTCATGCGCGTCACTAATTAGATGAC 16758 Query 419 GAGGCATTTGGCTACCT 435 |||| | ||||||| || Sbjct 16759 GAGGAACTTGGCTATCT 16775 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 6937 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 6996 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 6997 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 7043 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 9378 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 9437 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 9438 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 9484 Score = 89.7 bits (98), Expect = 2e-15 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 12959 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 13010 >seq2663 Length=793 Score = 165 bits (182), Expect = 3e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 283 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTT 224 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 223 TGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 183 >seq4596 Length=590 Score = 156 bits (172), Expect = 1e-35 Identities = 94/99 (95%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 115 TTAAGAGAGACATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTG 56 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||| Sbjct 55 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 17 >seq4377 Length=5907 Score = 145 bits (160), Expect = 2e-32 Identities = 86/90 (96%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1026 TCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGA 967 Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| ||||||| Sbjct 966 GCACTGGGCAGAAATCACATTGTGTCAACA 937 Score = 129 bits (142), Expect = 2e-27 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3073 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 3014 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 3013 GAGGCATTTGGCTA 3000 >seq101 Length=15111 Score = 141 bits (156), Expect = 3e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||| Sbjct 4491 CTTCCTTAAGAGAGTCATATTTACTACCGCCGTTGACCCGCGCTTACTTGAATTTCTTCA 4432 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||||||||||||||||||||||||||||||||| Sbjct 4431 CTTTGACATTCAGAGCACTGGGCAGAAATCACA 4399 >seq378 Length=15135 Score = 129 bits (142), Expect = 2e-27 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 103 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 102 GAGGCATTTGGCTA 89 >seq3679 Length=1132 Score = 107 bits (118), Expect = 6e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 GACAGTAGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 1073 Query 429 GCTA 432 |||| Sbjct 1072 GCTA 1069 >seq3783 Length=876 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 456 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 515 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 516 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635121673920