Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 286 1e-74
seq2663 165 3e-38
seq4596 156 1e-35
seq4377 145 2e-32
seq101 141 3e-31
seq378 129 2e-27
seq3679 107 6e-21
seq3783 89.7 2e-15
>seq1058
Length=23677
Score = 286 bits (316), Expect = 1e-74
Identities = 227/274 (83%), Gaps = 13/274 (5%)
Strand=Plus/Plus
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229
||||| || || | ||||||| |||| ||||| |||||||||||||| | || |
Sbjct 9685 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAC 9744
Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278
|||| | ||||||||||| |||||||||| | ||| | ||| | |
Sbjct 9745 CAAACCGAAATCTAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 9804
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 9805 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 9864
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 9865 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATG 9924
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432
||||||||||||||||||||||||||||||||||
Sbjct 9925 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 9958
Score = 187 bits (206), Expect = 8e-45
Identities = 175/224 (78%), Gaps = 13/224 (6%)
Strand=Plus/Plus
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229
||||| || || | ||||||| |||| ||||| |||||||||||||| | || |
Sbjct 7242 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTCGATAC 7301
Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278
|||| | ||||||||||| |||||||||| | ||| | ||| | |
Sbjct 7302 CAAACCGAAATCTAATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 7361
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 7362 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 7421
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 7422 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAATGAATCT 7465
Score = 116 bits (128), Expect = 1e-23
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 16699 AGTAGATAGGGACAGTAGGAATCTCGATAATCCATTCATGCGCGTCACTAATTAGATGAC 16758
Query 419 GAGGCATTTGGCTACCT 435
|||| | ||||||| ||
Sbjct 16759 GAGGAACTTGGCTATCT 16775
Score = 89.7 bits (98), Expect = 2e-15
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||||||||| | | ||||||| | | |||| |||| |||||||| ||||||
Sbjct 6937 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 6996
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| | |||||| ||||||||| ||||||||| ||||| |||||||
Sbjct 6997 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 7043
Score = 89.7 bits (98), Expect = 2e-15
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||||||||| | | ||||||| | | |||| |||| |||||||| ||||||
Sbjct 9378 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 9437
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| | |||||| ||||||||| ||||||||| ||||| |||||||
Sbjct 9438 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 9484
Score = 89.7 bits (98), Expect = 2e-15
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 12959 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 13010
>seq2663
Length=793
Score = 165 bits (182), Expect = 3e-38
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 283 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTT 224
Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||| |||||||
Sbjct 223 TGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 183
>seq4596
Length=590
Score = 156 bits (172), Expect = 1e-35
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 115 TTAAGAGAGACATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTG 56
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||| |||||||
Sbjct 55 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 17
>seq4377
Length=5907
Score = 145 bits (160), Expect = 2e-32
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1026 TCATAGTTACTCCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGA 967
Query 504 GCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||| |||||||
Sbjct 966 GCACTGGGCAGAAATCACATTGTGTCAACA 937
Score = 129 bits (142), Expect = 2e-27
Identities = 73/74 (99%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3073 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 3014
Query 419 GAGGCATTTGGCTA 432
||||||||||||||
Sbjct 3013 GAGGCATTTGGCTA 3000
>seq101
Length=15111
Score = 141 bits (156), Expect = 3e-31
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|| |||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||
Sbjct 4491 CTTCCTTAAGAGAGTCATATTTACTACCGCCGTTGACCCGCGCTTACTTGAATTTCTTCA 4432
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACA 522
|||||||||||||||||||||||||||||||||
Sbjct 4431 CTTTGACATTCAGAGCACTGGGCAGAAATCACA 4399
>seq378
Length=15135
Score = 129 bits (142), Expect = 2e-27
Identities = 73/74 (99%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 103
Query 419 GAGGCATTTGGCTA 432
||||||||||||||
Sbjct 102 GAGGCATTTGGCTA 89
>seq3679
Length=1132
Score = 107 bits (118), Expect = 6e-21
Identities = 62/64 (97%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GACAGTAGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 1073
Query 429 GCTA 432
||||
Sbjct 1072 GCTA 1069
>seq3783
Length=876
Score = 89.7 bits (98), Expect = 2e-15
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||||||||| | | ||||||| | | |||| |||| |||||||| ||||||
Sbjct 456 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 515
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| | |||||| ||||||||| ||||||||| ||||| |||||||
Sbjct 516 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635121673920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |