Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 414 3e-113
seq2337 401 2e-109
seq1918 398 2e-108
seq4392 277 5e-72
seq4089 176 1e-41
>seq1058
Length=23677
Score = 414 bits (458), Expect = 3e-113
Identities = 408/518 (79%), Gaps = 18/518 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57
|||||||||||||||||| | || | | ||| ||||||| ||||| | |||||||
Sbjct 1310 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 1369
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
|||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1370 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 1429
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1430 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 1489
Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|||| || || |||||||| ||||||||||||||||| ||||||| || | ||| ||
Sbjct 1490 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 1549
Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292
| |||| |||| ||| || | ||||| || | ||||| | | | |
Sbjct 1550 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 1608
Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348
|| | | |||| |||||||| ||| | | || | ||| | ||||| | |||||
Sbjct 1609 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATG 1668
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406
||||||||||||||||||||| |||||||| ||| | || || ||| || ||| ||
Sbjct 1669 TATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 1726
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
||||||| ||||||||| || || |||||||| | || | | | ||||||||||||||
Sbjct 1727 AACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCA 1785
Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||| |||||||||||
Sbjct 1786 TGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 1823
>seq2337
Length=833
Score = 401 bits (444), Expect = 2e-109
Identities = 405/518 (78%), Gaps = 18/518 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57
|||||||||||||||||| | || | | ||| ||||||| ||||| | |||||||
Sbjct 228 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 287
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
|||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 288 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 347
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 348 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 407
Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|||| || || |||||||| ||||||||||||||||| ||||||| || | ||| ||
Sbjct 408 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGACCTGTCGTCG 467
Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292
| |||| ||| ||| || | ||||| || | ||||| | | | |
Sbjct 468 GTACAAGAACATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 526
Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348
|| | | |||| |||||||| ||| | | || | ||| | ||||| | ||||
Sbjct 527 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATT 586
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406
|||||| |||||||||||||| |||||||| ||| | || || ||| || ||| ||
Sbjct 587 TATTAGATCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 644
Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466
||||||| ||||||||| || || |||||||| | || | | | ||||||||||||||
Sbjct 645 AACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCA 703
Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||| |||||||||||
Sbjct 704 TGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 741
>seq1918
Length=624
Score = 398 bits (440), Expect = 2e-108
Identities = 406/520 (78%), Gaps = 20/520 (4%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57
|||||||||||||||||| | || | | ||| ||||||| ||||| | |||||||
Sbjct 580 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 521
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
|||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 520 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 461
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 460 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAAACATG 401
Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|||| || || |||||||| ||||||||||||||||| ||||||| || | ||| ||
Sbjct 400 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 341
Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292
| |||| |||| ||| || | ||||| || | ||||| | | | |
Sbjct 340 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 282
Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348
|| | | |||| |||||||| ||| | | || | ||| | ||||| | |||||
Sbjct 281 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATG 222
Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406
||||||||||||||||||||| |||||||| ||| | || || ||| || ||| ||
Sbjct 221 TATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 164
Query 407 AACTGATTTA--ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
||||||| || || |||| || || |||||||| | || | | | ||||||||||||
Sbjct 163 AACTGATATAATATAAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATG 105
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||| |||||||||||
Sbjct 104 CATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 65
>seq4392
Length=38752
Score = 277 bits (306), Expect = 5e-72
Identities = 216/257 (84%), Gaps = 3/257 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57
|||||||||||||||||| | || | | ||| ||||||| ||||| | |||||||
Sbjct 3454 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 3395
Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117
|||||||| | |||| |||||||||| |||||||||||||||| || ||||||||||||
Sbjct 3394 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCTTTAGATGTGGTAGCC 3335
Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 3334 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 3275
Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|||| || || |||||||| || |||||||||||||| ||||||| || | ||| ||
Sbjct 3274 GTAGTCCTAGATACTACCATCAAAGGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 3215
Query 238 GCTCAAGGCCATGCGAT 254
| |||| |||| ||||
Sbjct 3214 GTACAAGACCATACGAT 3198
>seq4089
Length=19780
Score = 176 bits (194), Expect = 1e-41
Identities = 242/325 (74%), Gaps = 19/325 (6%)
Strand=Plus/Minus
Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247
|| |||||||| ||||||||||||||||| ||||||| || | ||| ||| |||| ||
Sbjct 1208 ATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACC 1149
Query 248 ATGCGATTCGTTAAGTTATTATGAATCACCAAGGA--GCCCCGAAGGGCGTTGGTTTTTT 305
|| |||| | | ||||| || | ||| || | ||| | ||||||||
Sbjct 1148 ATACGATCTGC-ATGTTATCTAGAGTT--CAACGAATGTAACGATCGC--TTGGTTTT-- 1096
Query 306 ATC-TAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAG--CATGTATTAGCTCTAGA 361
| | ||||||| |||| | | || ||| |||||| | |||||||||||||||||
Sbjct 1095 AGCATAATAAA-ACACACGTCCCATAAGGTTTGGTTTTAAAATCATGTATTAGCTCTAGA 1037
Query 362 ATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATG 419
|||||||| |||||||| ||| | || || ||| || ||| ||||||||| |||||
Sbjct 1036 ATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCATAACTGATATAATG 979
Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479
|||| || || ||||| || | || | | | |||||||||||| |||||||| |||||
Sbjct 978 AGCCTTTTGCGGTTTCCCT-TTTAATTCGTGTGTACTTAGACATGTATGGCTTAGTCTTT 920
Query 480 GAGACAAGCATATGACTACTGGCAG 504
||||||||||||| || ||||||||
Sbjct 919 GAGACAAGCATATAACAACTGGCAG 895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510327651840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |