Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1058 414 3e-113 seq2337 401 2e-109 seq1918 398 2e-108 seq4392 277 5e-72 seq4089 176 1e-41 >seq1058 Length=23677 Score = 414 bits (458), Expect = 3e-113 Identities = 408/518 (79%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 1310 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 1369 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1370 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 1429 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1430 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 1489 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 1490 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 1549 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292 | |||| |||| ||| || | ||||| || | ||||| | | | | Sbjct 1550 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 1608 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348 || | | |||| |||||||| ||| | | || | ||| | ||||| | ||||| Sbjct 1609 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATG 1668 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406 ||||||||||||||||||||| |||||||| ||| | || || ||| || ||| || Sbjct 1669 TATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 1726 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||| ||||||||| || || |||||||| | || | | | |||||||||||||| Sbjct 1727 AACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCA 1785 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| ||||||||||| Sbjct 1786 TGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 1823 >seq2337 Length=833 Score = 401 bits (444), Expect = 2e-109 Identities = 405/518 (78%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 228 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 287 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 288 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 347 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 348 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 407 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 408 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGACCTGTCGTCG 467 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292 | |||| ||| ||| || | ||||| || | ||||| | | | | Sbjct 468 GTACAAGAACATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 526 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348 || | | |||| |||||||| ||| | | || | ||| | ||||| | |||| Sbjct 527 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATT 586 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406 |||||| |||||||||||||| |||||||| ||| | || || ||| || ||| || Sbjct 587 TATTAGATCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 644 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||| ||||||||| || || |||||||| | || | | | |||||||||||||| Sbjct 645 AACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCA 703 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| ||||||||||| Sbjct 704 TGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 741 >seq1918 Length=624 Score = 398 bits (440), Expect = 2e-108 Identities = 406/520 (78%), Gaps = 20/520 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 580 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 521 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 520 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 461 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 460 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAAACATG 401 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 400 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 341 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGG---AGCCCCGAAGG 292 | |||| |||| ||| || | ||||| || | ||||| | | | | Sbjct 340 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATGTAACGATCTTGCGA 282 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTT--TAGCATG 348 || | | |||| |||||||| ||| | | || | ||| | ||||| | ||||| Sbjct 281 TCGCTTGGTTTTAGCCTAATAAAAGCACACGTCCCATAAGGTCCGTGTTTTAATTGCATG 222 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGAT 406 ||||||||||||||||||||| |||||||| ||| | || || ||| || ||| || Sbjct 221 TATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCAT 164 Query 407 AACTGATTTA--ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||| || || |||| || || |||||||| | || | | | |||||||||||| Sbjct 163 AACTGATATAATATAAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATG 105 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| ||||||||||| Sbjct 104 CATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 65 >seq4392 Length=38752 Score = 277 bits (306), Expect = 5e-72 Identities = 216/257 (84%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 3454 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 3395 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| |||||||||||||||| || |||||||||||| Sbjct 3394 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCTTTAGATGTGGTAGCC 3335 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 3334 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 3275 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| || |||||||||||||| ||||||| || | ||| || Sbjct 3274 GTAGTCCTAGATACTACCATCAAAGGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 3215 Query 238 GCTCAAGGCCATGCGAT 254 | |||| |||| |||| Sbjct 3214 GTACAAGACCATACGAT 3198 >seq4089 Length=19780 Score = 176 bits (194), Expect = 1e-41 Identities = 242/325 (74%), Gaps = 19/325 (6%) Strand=Plus/Minus Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCC 247 || |||||||| ||||||||||||||||| ||||||| || | ||| ||| |||| || Sbjct 1208 ATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACC 1149 Query 248 ATGCGATTCGTTAAGTTATTATGAATCACCAAGGA--GCCCCGAAGGGCGTTGGTTTTTT 305 || |||| | | ||||| || | ||| || | ||| | |||||||| Sbjct 1148 ATACGATCTGC-ATGTTATCTAGAGTT--CAACGAATGTAACGATCGC--TTGGTTTT-- 1096 Query 306 ATC-TAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAG--CATGTATTAGCTCTAGA 361 | | ||||||| |||| | | || ||| |||||| | ||||||||||||||||| Sbjct 1095 AGCATAATAAA-ACACACGTCCCATAAGGTTTGGTTTTAAAATCATGTATTAGCTCTAGA 1037 Query 362 ATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATG 419 |||||||| |||||||| ||| | || || ||| || ||| ||||||||| ||||| Sbjct 1036 ATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACCATAACTGATATAATG 979 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||| || || ||||| || | || | | | |||||||||||| |||||||| ||||| Sbjct 978 AGCCTTTTGCGGTTTCCCT-TTTAATTCGTGTGTACTTAGACATGTATGGCTTAGTCTTT 920 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| || |||||||| Sbjct 919 GAGACAAGCATATAACAACTGGCAG 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510327651840