Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10 396 2e-105 >seq10 Length=19787792 Score = 396 bits (438), Expect = 2e-105 Identities = 591/838 (71%), Gaps = 3/838 (0%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 ||||||| || ||||||||||| ||||| ||||| ||| | || || ||| || |||| Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| ||| | | | || | | || || |||||| |||| ||||| || | Sbjct 12208508 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTG 12208449 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | |||||||| || || || |||||| | | || || || ||||||||||| | Sbjct 12208448 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 12208389 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| Sbjct 12208388 CAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 12208329 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || ||||| || || ||||| |||||| | ||| || || |||||||||| Sbjct 12208328 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 12208269 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || ||||| || ||||| || ||||| || ||||| |||||| | ||||| || Sbjct 12208268 CTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCCT 12208209 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | |||| | |||| || || | | || ||||||| || || || | || | Sbjct 12208208 CGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCT 12208149 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | ||||| |||||| | ||||||||| ||||||| ||||| || ||||||||||||| Sbjct 12208148 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGA 12208089 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| |||| || || ||||| || | || || || ||||| | ||| Sbjct 12208088 CCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGG---TGC 12208032 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | | | | | |||| ||| | || || | |||||| | ||||| | | | Sbjct 12208031 TCATGTATCACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGG 12207972 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | || || ||||| ||||| || || ||||| || |||||||| | || |||| Sbjct 12207971 ATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCA 12207912 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 |||| |||| || ||||| ||||| || || || || ||||| || ||| | | || Sbjct 12207911 TGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGC 12207852 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 | ||| || |||||| || || || || || || |||||||||| ||||| |||| Sbjct 12207851 TCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGC 12207792 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 |||| || ||||| || || || ||||| || | ||| || || || ||||||| Sbjct 12207791 TGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTGT 12207734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544790725600