Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017
65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq10 396 2e-105
>seq10
Length=19787792
Score = 396 bits (438), Expect = 2e-105
Identities = 591/838 (71%), Gaps = 3/838 (0%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
||||||| || ||||||||||| ||||| ||||| ||| | || || ||| || ||||
Sbjct 12208568 AGGCGGAGGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCAAAGGACGCGACGGACT 12208509
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
||| ||| | | | || | | || || |||||| |||| ||||| || |
Sbjct 12208508 GGGCCCGTCTCACTGACAACGAGCGCTACTTTATCTCCCATGTGCTGGCCTTCTTCGCTG 12208449
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| |||||||| || || || |||||| | | || || || ||||||||||| |
Sbjct 12208448 CCTCGGACGGCATTGTTAACGAGAATCTGGTCGAGCGCTTTAGTCAGGAGGTGCAGATCA 12208389
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 12208388 CAGAGGCACGTTGCTTCTACGGCTTCCAGATAGCCATGGAGAATGTGCACTCCGAGATGT 12208329
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||| || ||||| || || ||||| |||||| | ||| || || ||||||||||
Sbjct 12208328 ACAGCGTGCTCATTGACACCTACATACGGGAGCCGCAGGAGCGCGACTACTTGTTCAATG 12208269
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| || ||||| || ||||| || ||||| || ||||| |||||| | ||||| ||
Sbjct 12208268 CTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCTGGATATCCT 12208209
Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
| | |||| | |||| || || | | || ||||||| || || || | || |
Sbjct 12208208 CGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCT 12208149
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| ||||| |||||| | ||||||||| ||||||| ||||| || |||||||||||||
Sbjct 12208148 TTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGA 12208089
Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645
||||| ||| ||| |||| || || ||||| || | || || || ||||| | |||
Sbjct 12208088 CCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGG---TGC 12208032
Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705
| | | | | |||| ||| | || || | |||||| | ||||| | | |
Sbjct 12208031 TCATGTATCACCATCTAGTGCAGCGGCCCAAGCGGGAGCGCATCATCGAGATCATCAGGG 12207972
Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765
| || || ||||| ||||| || || ||||| || |||||||| | || ||||
Sbjct 12207971 ATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAATTTGATTGGCA 12207912
Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825
|||| |||| || ||||| ||||| || || || || ||||| || ||| | | ||
Sbjct 12207911 TGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCTGCTAGGGGAGC 12207852
Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885
| ||| || |||||| || || || || || || |||||||||| ||||| ||||
Sbjct 12207851 TCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGAGATGATCTCGC 12207792
Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943
|||| || ||||| || || || ||||| || | ||| || || || |||||||
Sbjct 12207791 TGGACGGAAAGACAAACTTCTTTGAGAAGAAGGTGGCCGAGTACCAGCGCATGGGTGT 12207734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397544790725600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |