Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20pseudoobscura_20pseudoobscura_20[refseq_20GCF_5F0000017 65.3_202013-04-11] 4,790 sequences; 152,696,384 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 7e-12 seq4 87.8 7e-12 seq7 86.0 3e-11 >seq14 Length=11685562 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || |||| || || |||||||| ||| ||| | || |||||| | Sbjct 6320694 AGATGCGCTCGCAAATGAACTGAGCAATGCGATCTCCAACCTTCACCTCGAAGTCCGTAT 6320635 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 |||||||||||||||| || || || | ||||| | || ||| || || |||| Sbjct 6320634 CAGAGTGGTTGAAGAGAACGACACCCAGGTTGCCGCGGTAGTCTTCGTCCACCACGCCGG 6320575 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGT 21894 |||| || || | ||||||| |||||| || || | ||||||||||| || ||| Sbjct 6320574 CGCCCACATCAATGAAATTCTTCACGGCCAGGCCAGAGCGAGGAGCGACGCGACCATAGG 6320515 Query 21895 GGCCCT 21900 ||||| Sbjct 6320514 AGCCCT 6320509 >seq4 Length=9148293 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349075 GTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGC 349134 || || |||||||||||||| |||| |||||| ||||||||||| | | || || || Sbjct 6349099 GTTGATAATCTCCTTGAGTCGAGGCACGCCCAGTGTCACGTTCTTCGAGGACACACCAGC 6349040 Query 349135 AAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAG 349194 || ||||| || | ||| |||| ||| ||| || ||||| | | |||| | || | Sbjct 6349039 GAAATGGAACGTGTTGAGTGTCATCTGGGTGGCCGGTTCGCCCAAACTCTGGGCGGCCAA 6348980 Query 349195 GATGCCTACCATCTCGCCGGG 349215 | ||| ||||||||||| || Sbjct 6348979 GGCGCCAACCATCTCGCCAGG 6348959 Score = 86.0 bits (94), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| || || || ||||| ||||||||| ||| || |||| || | || | Sbjct 6347120 TCTCGTCGCCATCGAAATCGGCATTGTAGGGCGATGTGCAGGAGAGGTTCATTCGGAACG 6347061 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 || | | ||| | ||| ||| || ||| |||| || | |||||||||||| Sbjct 6347060 TGGACCA----GGGCAGAACCTTCACACGATGCCCCATCATACTCATCTTGTGGAGCGTG 6347005 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 |||||||||||| ||| | | ||| | ||||||| |||||||||||||||| |||| Sbjct 6347004 GGCTGGCGATTGAAGATCACAAGATCGTCGTCGCGCAGATGCCTCTCCACCTTGTAGCCG 6346945 >seq7 Length=13333775 Score = 86.0 bits (94), Expect = 3e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 626193 ACTACATCGAATGGGAGGACTACTTTATGATGCTGGCCCTTCTCTCGGCCCAGCGCTCCA 626252 ||||| | | ||||| || ||||| ||| | |||| ||||| ||||||||| || Sbjct 2100590 ACTACCTGCATTGGGATGATTACTTCATGGCCACGTCCCTGCTCTCAGCCCAGCGCAGCA 2100649 Query 626253 AGGACCCCAACACTCAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTA 626312 | ||||| ||| ||||| || ||||||||||| || || | |||||| | || | | Sbjct 2100650 AAGACCCTGTCACCCAGGTGGGCGCCTGCATCGTGGACCAGCAGAAGCGCATTGTTGCCA 2100709 Query 626313 TGGGCTACAACGGCTTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTGG 626362 | || ||||| || || ||||| ||||| || |||| || || ||| Sbjct 2100710 TCGGTTACAATGGATTACCGCGCAACTGCAGCGATGACGAGTTCCCCTGG 2100759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084608135052420