Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq7388 154 3e-35 seq6942 93.3 8e-17 >seq7388 Length=1197 Score = 154 bits (170), Expect = 3e-35 Identities = 233/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| ||||||||| |||| | || | |||||||||| || ||||| | | | | Sbjct 675 AGGGGAGTGAAATAGTTCCTGCAACCATGTGCCTACAAGCAGTTAGAGCCCATTTAAG-G 617 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | ||||| || ||||||| | || | || |||||||| Sbjct 616 GTGATAGCGTGCCTCTTGTAGAATGAACCGGCGAGTTA-TAGTTGCATGCAAGGTTAAG- 559 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGA-GTTGGTGGCG 189 || | || |||||||| ||||||||| || || |||||| || || || || Sbjct 558 -CTGAAAAAGCGG-AGCCGAAGCGAAAGCGAGTCTGAATAGGGCGTTGAAGTATGTTGCC 501 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | |||| |||| ||||||| || | Sbjct 500 ATAGACCCGAAACCAGGTGATCTATCCATGTCCAGGATGAAAGTGCGGTAATACGCACCG 441 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| ||| ||| || |||||||||||| | |||||| | || ||| ||||||| Sbjct 440 GAGGTCCGGACCCGTGTACGTTGAAAAGTGCTGGGATGAGGTGTGGATAGCGGTGAAATT 381 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||| | |||| ||| |||||| || Sbjct 380 CCAAACGAACTTGGAGATAGCTGGT 356 >seq6942 Length=1129 Score = 93.3 bits (102), Expect = 8e-17 Identities = 126/170 (74%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||||| |||| ||| |||||||||| ||||||||| Sbjct 163 CCCGACGAGGGGAGTGAAATAGACC-TGAAACCGGATGCCTACAAGCAGTCGGAGCCTCT 105 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | || ||||||||||| ||||||| |||||| | | |||||| | || ||||||| Sbjct 104 T-ATGGGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCGAG 47 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGG 173 |||| | | ||| ||| || || ||||||||| || || |||| Sbjct 46 CTTAA-GCCGATAGG---TGTAGGCGTAGCGAAAGCGAGTCTGAATAGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972578016768