Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq22814 159 5e-37 seq18582 159 5e-37 seq7469 159 5e-37 seq6815 159 5e-37 seq7077 154 2e-35 seq6676 141 1e-31 >seq22814 Length=1408 Score = 159 bits (176), Expect = 5e-37 Identities = 180/229 (79%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 211 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 268 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 269 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 325 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 326 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 382 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 383 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 430 >seq18582 Length=1199 Score = 159 bits (176), Expect = 5e-37 Identities = 180/229 (79%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 338 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 281 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 280 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 224 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 223 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 167 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 166 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 119 >seq7469 Length=1115 Score = 159 bits (176), Expect = 5e-37 Identities = 179/228 (79%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 523 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 580 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT-GAAATTTCAAAGATT 119 | ||| | | |||| || || | | ||||| | || || | | |||| | || Sbjct 581 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGAAAGTAGGTTCAGCGGTT 639 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTG 177 |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||||| Sbjct 640 TACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGTG 696 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 697 CAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 743 >seq6815 Length=1056 Score = 159 bits (176), Expect = 5e-37 Identities = 180/229 (79%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 338 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 281 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 280 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 224 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 223 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 167 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 166 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 119 >seq7077 Length=1125 Score = 154 bits (170), Expect = 2e-35 Identities = 179/229 (78%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 823 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 766 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 765 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 709 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||| Sbjct 708 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATCGTAGCGCGCGT 652 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 651 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 604 >seq6676 Length=1148 Score = 141 bits (156), Expect = 1e-31 Identities = 175/228 (77%), Gaps = 15/228 (7%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| | || ||||| || ||||||||| |||||| |||| |||| Sbjct 1 ACAAAGGGCAGGGACGTAATAAATGCGAG-TTAATGACTCGCACTTACT-GGAAATTCCA 58 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT---TCAAAGATT 119 ||| | | |||| || || | | ||||| | | |||||| | ||| | || Sbjct 59 AGTTCATGTG-AACAGTTTCAGTTCACAATCCCAA---CAATGAAAGTGGTTCAGCGGTT 114 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGTG 177 |||||||||| |||| | || ||| |||||| | ||| | || ||||||||||||| Sbjct 115 TACCCGGACCTCTCGGTCTAGAAAATA--CTCGTTTA-TACTTTCATTGTAGCGCGCGTG 171 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 | |||||| |||||||||||||||||| ||||||||||| ||||| || Sbjct 172 CAGCCCAGGACATCTAAGGGCATCACATACCTGTTATTG-CTCAATCT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751833763585