Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq18703 203 6e-50 seq22814 122 2e-25 seq6913 120 6e-25 seq6676 82.4 1e-13 >seq18703 Length=1026 Score = 203 bits (224), Expect = 6e-50 Identities = 219/282 (78%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | || ||| | || ||| | ||| | ||||||||||||||||| ||||||| Sbjct 675 TGCCCTTGATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 617 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||||| || ||| | ||||||||||||| ||||||||| | |||||| Sbjct 616 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 558 Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | || || ||||||||||| ||||| | |||||| | || Sbjct 557 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 498 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| | | ||||||||||| || Sbjct 497 ATTGCGGTGTGAGAGGTGAAATTCTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATT 438 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 437 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 397 >seq22814 Length=1408 Score = 122 bits (134), Expect = 2e-25 Identities = 184/252 (73%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 1209 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 1150 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 1149 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 1091 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 1090 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 1031 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA-TGTTTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| || ||||||||||||||| |||| Sbjct 1030 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATTGTTTTCATTAATCA-AGAAC 972 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 971 GAAAGTTAGAGG 960 >seq6913 Length=1203 Score = 120 bits (132), Expect = 6e-25 Identities = 182/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 518 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 577 Query 131 -GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAAT 187 || ||||| |||| ||| | | ||||| ||| ||||||| || | | ||||| Sbjct 578 AGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAAT 636 Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 637 GATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGAC 696 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| ||||||||||||||||| |||| Sbjct 697 CGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAAC 755 Query 307 GAAAGTTAG 315 ||||||||| Sbjct 756 GAAAGTTAG 764 >seq6676 Length=1148 Score = 82.4 bits (90), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 953 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 894 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 893 GGGATAATGAAATAAGACCT-CAGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 835 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 834 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 775 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT 288 |||||||| | |||||| | || |||| ||||| Sbjct 774 GTCGTAAGACTAAGTTAAGCGAAAACATTTGCCAAAGATGT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914991160512