Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq6942 109 5e-22 >seq6942 Length=1129 Score = 109 bits (120), Expect = 5e-22 Identities = 140/189 (74%), Gaps = 13/189 (7%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| || | |||||||| ||||||||| | ||||||||||| Sbjct 614 GGCATTCGGTGGATGCCTTGGTACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAG 555 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCA----ACCCGA 116 ||||||||| || | | ||||||||||||||||||||||||||| ||||| Sbjct 554 CTACGGGGAGCCGCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGC 495 Query 117 TA---TATTGGAG-ATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAAC 171 | ||| || | || |||| ||| || |||||||| ||||||||||||| Sbjct 494 AAGGGTATCACAGTCTGAATACATAGGGCT----GTGAGGCGAACCCGGGGAACTGAAAC 439 Query 172 ATCTAAGTA 180 |||| |||| Sbjct 438 ATCTCAGTA 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476694599039