Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7184 295 1e-77 seq7165 291 1e-76 seq7475 286 6e-75 seq6738 253 3e-65 seq6978 161 2e-37 seq6834 109 9e-22 >seq7184 Length=1086 Score = 295 bits (326), Expect = 1e-77 Identities = 214/244 (88%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 325 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 384 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 385 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 443 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 444 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 503 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 504 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 562 Query 269 GGCC 272 |||| Sbjct 563 GGCC 566 >seq7165 Length=1015 Score = 291 bits (322), Expect = 1e-76 Identities = 213/245 (87%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 439 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 498 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 499 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 557 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 558 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 617 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA--GGATCGAT 267 ||| |||||||||||||| ||||||| | ||| || || ||| |||||||| Sbjct 618 CCTATGGTAACTTTTCTGACACCTCTTGTTAAAAAACTCTTTAAACCAAAAAGGATCGAT 677 Query 268 AGGCC 272 ||||| Sbjct 678 AGGCC 682 >seq7475 Length=1137 Score = 286 bits (316), Expect = 6e-75 Identities = 212/244 (87%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 539 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 598 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | ||||||||||||||||||||| ||||| |||||| |||||||||||||||| Sbjct 599 TGCA-TGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCG 657 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 658 ACATCGAAGGATACAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 717 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATA 268 ||| |||||||||||||| ||||||| | | ||| || | | |||||||||||| Sbjct 718 CCTATGGTAACTTTTCTGACACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATA 776 Query 269 GGCC 272 |||| Sbjct 777 GGCC 780 >seq6738 Length=1121 Score = 253 bits (280), Expect = 3e-65 Identities = 195/225 (87%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 50 AACCT-GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 ||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1121 AACCTAGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGCA-TGGGTGAACAATCC 1063 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1062 AACGCTTGT-GAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 1004 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1003 CGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGA 944 Query 229 CACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCC 272 ||||||| | | ||| || | | |||||||||||||||| Sbjct 943 CACCTCTTG-TTAAAAACTCTTTAAACCAAAAGGATCGATAGGCC 900 >seq6978 Length=1206 Score = 161 bits (178), Expect = 2e-37 Identities = 104/114 (91%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| |||||| |||| || || |||||||||||||||||||||||||||||| Sbjct 1093 TACTAAGTTCAATTACTATTGCGGTAACATTCATCAGTAGGGTAAAACTAACCTGTCTCA 1152 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 1206 >seq6834 Length=1027 Score = 109 bits (120), Expect = 9e-22 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 952 GTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 1011 Query 90 ATTAGTGGGTGAACAAT 106 | |||||||||||| Sbjct 1012 -TGCATGGGTGAACAAT 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854205034464