Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq7388 300 6e-79 seq6942 223 1e-55 >seq7388 Length=1197 Score = 300 bits (332), Expect = 6e-79 Identities = 381/516 (74%), Gaps = 21/516 (4%) Strand=Plus/Plus Query 89 GGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAA 147 || ||||| | ||| ||||| |||||||||| || | | ||| ||| ||||| Sbjct 280 GGACCCCTTGTCCAAACAGTGGCTCTACCTCCATGATTCTAAATCCGAGGCTAACCCTAA 339 Query 148 ATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACA 207 | ||||||| |||||||||||||| | ||||| | |||| ||||||| ||||||||| Sbjct 340 AGCTATTTCGGAGAGAACCAGCTATCTCCAAGTTCGTTTGGAATTTCACCGCTATCCACA 399 Query 208 GGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGC 267 ||||||| || |||||||| || |||| ||| ||||| || ||||| || | Sbjct 400 CCTCATCCCAGCACTTTTCAACGTACACGGGTCCGGACCTCCGGTGCGTATTACC-GCAC 458 Query 268 TT-CAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT--AC 324 || || |||| |||||||||||||| | | ||||||||| || | || | | || Sbjct 459 TTTCATCCTGGACATGGATAGATCACCTGGTTTCGGGTCT--ATGGCAACATACTTCAAC 516 Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACA-CGGGTTAACCTCGCGACACAA 383 ||||||||| |||||||||||||| ||||| | | | | ||||||| || | ||| Sbjct 517 GCCCTATTCAGACTCGCTTTCGCTTCGGCTCCGCTTTTTCAGCTTAACCTTGC-ATGCAA 575 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | ||||||| || ||||||| ||| |||||||| ||||| | |||| || Sbjct 576 CTATAACTCGCCGGTTCATTCTACAAGAGGCACGCTATCACC-----CTTAAATGG---- 626 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 |||| || | |||||||||||||||| |||| ||||||||||||||| | ||||| Sbjct 627 ---GCTCTAACTGCTTGTAGGCACATGGTTGCAGGAACTATTTCACTCCCCTTCCGGGGT 683 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||||||||||||||||||| || | ||||||||||| | | ||||||||| || Sbjct 684 GCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTATTTAGCCT 743 Query 564 TAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | | |||||| || | ||| |||| ||||| Sbjct 744 TGGGAGATGGTCCTCCCGGCTTCCGACGACGTTTCA 779 >seq6942 Length=1129 Score = 223 bits (246), Expect = 1e-55 Identities = 211/266 (79%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACG 385 |||||||| ||||||||||||||||| |||| || ||| |||| ||||| || ||| Sbjct 1 CCCTATTCAGACTCGCTTTCGCTACGCCTACACCTATCGGCTTAAGCTCGCTGCA-AACA 59 Query 386 CAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC 445 |||||||| | | |||| | ||||||| ||||||||||| | ||| |||| Sbjct 60 GAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCC----CATAAGAGGC----- 110 Query 446 AGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA-GGGGTA 504 |||||| | ||||||||| |||||||||| |||||||||||||| | ||||| Sbjct 111 ---TCCGACTGCTTGTAGGCATCCGGTTTCAGGT-CTATTTCACTCCCCTCGTCGGGGTG 166 Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| Sbjct 167 CTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGGCTT 226 Query 565 AACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| ||| |||| || Sbjct 227 GGAGGGTGGTCCCCCCATGTTCAGAC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817185241856