Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6942 286 9e-75 seq7388 250 6e-64 >seq6942 Length=1129 Score = 286 bits (316), Expect = 9e-75 Identities = 239/287 (83%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAA 196 ||||| | ||||||||||| |||||||||| | ||||| | ||||||| | ||| | Sbjct 1 CCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTATCGGCTTAAGCT----CGCTGCA 55 Query 197 AATA---AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCC 253 || | | |||||||||||||||||||||||||||| ||||||| | || |||||| Sbjct 56 AACAGAAACTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCATAAGA--GGCTCC 113 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 |||||||||| |||| |||||||||| ||||||||||||||||| |||||| |||||| Sbjct 114 GACTGCTTGTAGGCATCCGGTTTCAGG-TCTATTTCACTCCCCTCGTCGGGGTGCTTTTC 172 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGA 373 |||||||||||||||||| ||||||||||||||| | ||||||||| |||||||| Sbjct 173 ACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACCAGGGAGTATTTAGGCTTGGAGGG 232 Query 374 TGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 233 TGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 279 >seq7388 Length=1197 Score = 250 bits (276), Expect = 6e-64 Identities = 320/421 (76%), Gaps = 25/421 (6%) Strand=Plus/Plus Query 7 ATCCACAGGTCATTCC-GCTAACTTTTTCAACGGTAGTCGGTTC-GGTCCTCCAGTTAGT 64 ||||||| |||| || || |||||| ||||| || ||| || || ||||| || || Sbjct 393 ATCCACACCTCATCCCAGC--ACTTTT-CAACG-TACACGGGTCCGGACCTCCGGTGCGT 448 Query 65 AGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC 124 | ||||| || ||||| |||| ||| ||||||||| || ||||| ||||||||| | Sbjct 449 A-TTACCGCAC-TTTCATCCTGGACAT-GGATAGATCACCTGGTTT-CGGGTCTATGGCA 504 Query 125 CAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTC--GGTTA 181 | ||| | ||||||| | ||||||||||| |||| || |||| || || | ||| Sbjct 505 -ACATACTTCAACGCCCTATTCAGACTCGCTTT-CGCTTCGGCTCCGCTTTTTCAGCTTA 562 Query 182 AGCTT---TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 | ||| ||| ||| |||| |||| | |||| ||||| ||| |||| |||||| Sbjct 563 ACCTTGCATGCAACT----ATAACTCGCCGGTTCATTCTACAAGAGGCACGCTATCACCC 618 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 || ||||||| |||||||||| ||| | |||| ||||| ||||||||||||||| Sbjct 619 TTAAA--TGGGCTCTAACTGCTTGTAGGCACATGGTTGCAGGAACTATTTCACTCCCCT- 675 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||| |||||| |||||||||||||||||| ||||||||||||||| | |||||| Sbjct 676 TCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGGTAGTA 735 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||| |||||||| ||| ||| ||| | ||||| |||| || | |||| Sbjct 736 TTTAGCCTTGGGAGATGGTCCTCCCGGCTTCCGACGACGTTTCACGTGTGTCGCCGTACT 795 Query 419 C 419 | Sbjct 796 C 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241316679296