Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq22814 82.4 5e-14 seq7469 78.8 6e-13 seq7077 78.8 6e-13 seq6815 78.8 6e-13 seq18582 75.2 7e-12 >seq22814 Length=1408 Score = 82.4 bits (90), Expect = 5e-14 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| | |||| ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 170 CTCACTAAAATAATTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 228 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 229 TAAT-CAATGCGAG 241 >seq7469 Length=1115 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 483 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 540 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 541 TAAT-CAATGCGAG 553 >seq7077 Length=1125 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 863 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 806 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 805 TAAT-CAATGCGAG 793 >seq6815 Length=1056 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 378 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 321 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 320 TAAT-CAATGCGAG 308 >seq18582 Length=1199 Score = 75.2 bits (82), Expect = 7e-12 Identities = 54/60 (90%), Gaps = 2/60 (3%) Strand=Plus/Minus Query 63 TCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAG 122 ||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||| || || Sbjct 365 TCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAATGCGAG 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300735650420