Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq7388 264 4e-68 >seq7388 Length=1197 Score = 264 bits (292), Expect = 4e-68 Identities = 338/454 (74%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||||||| |||||||| ||||| |||||||||| ||||||||| |||| | || Sbjct 499 TAGACCCGAAACCAGGTGATCTATCCATGTCCAGGATGAAAGTGCGGTAATACGCACCGG 440 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||| |||| | |||||||| | |||||||| ||||| ||| ||||||| | Sbjct 439 AGGTCCGGACCCGTGTACGTTGAAAAGTGCTGGGATGAGGTGTGGATAGCGGTGAAATTC 380 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTC--AAGT 210 |||| |||||||| |||||||||||||||||||| |||||| ||||| | | Sbjct 379 CAAACGAACTTGGAGATAGCTGGTTCTCTCCGAAATAGCTTTAGGGTTAGCCTCGGATTT 320 Query 211 ATCACCATCGGGGGTAGAG-CACTGTTATGGCTAGGGGGTC---ATTGCGACTTACCAAA 266 | | ||| || ||||||| ||||||| ||| | |||||| ||| || |||| || Sbjct 319 AGAATCAT-GGAGGTAGAGCCACTGTT-TGGACAAGGGGTCCGTCTTG-GA-TTACTAAG 264 Query 267 CCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 ||||||||||| | | | || || | ||||||| || ||| ||| |||| Sbjct 263 TTCAGATAAACTCCGAATACCATTGATTTATATC-CGGGAGTCAGACGATGAGTGATAAG 205 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 ||| | ||| ||| ||| | || ||| | ||| ||||| ||| |||| ||||| Sbjct 204 ATCCATCGTCGAAAGGGGAACAGCCCAGACCACCAGTTAAGGTCCCTAAATATATGCTAA 145 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || || || | || |||| ||||| |||||||||||||| |||||||||| Sbjct 144 GTGGAA--AAGGCGGTGGAGTTGCATAGACAACTAGGATGTTGGCTCAGAAGCAGCCA-C 88 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||||||||||||| ||||||||||||||| Sbjct 87 CATTTAAAGAGTGCGTAATAGCTCACTAGTCGAG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689214450176