Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq6942 181 2e-43 seq7388 122 2e-25 >seq6942 Length=1129 Score = 181 bits (200), Expect = 2e-43 Identities = 231/314 (74%), Gaps = 13/314 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTAC----AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||||||||||||| ||| |||||||||||||||||| | ||||| ||||| Sbjct 607 GGTGGATGCCTTGG----TACCAGGAGGCGATGAAGGACGTAGCACGCTGCGAAAAGCTA 552 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 ||||||| || | || |||||||||| |||| ||||||||||| ||||| || Sbjct 551 CGGGGAGCC-GCGAGCAGGCTTTGATCCGTAGATATCCGAATGGGGCAACCCACCCGCAA 493 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 |||| || || ||||||||||||| || | |||||| ||| |||||||||||||| Sbjct 492 GGGT-ATCACAGTCTGAATACATAGGGCTGTGAGGCGAACCCGGGGAACTGAAACATCTC 434 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| ||| ||||||||| ||||| ||||||| |||||||||||||||| ||| Sbjct 433 AGTACCTGGAGGAAAAGACATCAATTGAGATTCTGCTAGTAGTGGCGAGCGAACGCGGAA 374 Query 246 GAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGG 305 || | | || ||||| || ||| |||||||| ||||||| || Sbjct 373 CAGGC---CAGTCATTTTTGAAGAAGAAGCAGAAGGATCTGGAAAGGTCCGCCATAGTGG 317 Query 306 GTGATAGCCCCGTA 319 |||||||||||||| Sbjct 316 GTGATAGCCCCGTA 303 >seq7388 Length=1197 Score = 122 bits (134), Expect = 2e-25 Identities = 186/259 (72%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAG-TAGCTTGCGAT 59 || || ||||||| ||||||||| | || |||||||||||| | || | |||| Sbjct 1196 AGGGCGCATGGTGAATGCCTTGGTACTAGGAGCCGATGAAGGACGGAACTAACAC-CGAT 1138 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| |||| || | | | |||||||||| |||||||||||||||||||||| Sbjct 1137 ATGCTTCGGGAAGCT-GTACGTAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCAA 1079 Query 120 CCCTTTGGGTC----ATTGCATGC---TGAATACATAGGTAT-GCAAAGCGAACGCGGCG 171 | | | ||| |||||| | ||||| ||||| | | | | ||||||| | Sbjct 1078 TCGTCTTAGTCGATGATTGCACGACAGTGAATTCATAGCTGTCGTGCGGTAAACGCGGGG 1019 Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGC 231 |||||||||||||||||| | |||||| ||||| || ||||||| |||||| ||| Sbjct 1018 AACTGAAACATCTAAGTACCCGCAGGAGTAGAAAAAAATTTCGATTCCCTAAGTAGCGGC 959 Query 232 GAGCGAAATGGGATGAGCC 250 ||||||| |||| |||| Sbjct 958 GAGCGAACGGGGAACAGCC 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918190430304