Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20rhopaloa_20[refseq_20GCF_5F000236305.1_202013-02-22] 22,819 sequences; 197,375,704 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7229 782 0.0 seq6738 363 5e-98 seq7156 336 7e-90 seq3381 293 8e-77 seq15766 196 2e-47 seq7068 190 7e-46 seq7184 107 6e-21 seq20300 93.3 1e-16 seq7475 89.7 2e-15 seq7165 89.7 2e-15 seq3219 82.4 2e-13 seq18679 77.0 1e-11 seq18613 77.0 1e-11 seq7320 77.0 1e-11 seq6834 77.0 1e-11 seq2849 77.0 1e-11 >seq7229 Length=1535 Score = 782 bits (866), Expect = 0.0 Identities = 502/541 (93%), Gaps = 9/541 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1470 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACATCTGCGTTATC 1411 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1410 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1351 Query 127 GGCCCGCGAA--GGACCTT-AACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| |||| ||||||| || || |||| ||| |||| |||| |||||||||| Sbjct 1350 AGCCC-CGAATGGGACCTTGAATGCTAGAACGTGGAAAATGAATTCCAGCTCCGCTTCAT 1292 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 ||| |||||||| |||| |||| ||||||||||||||||| |||||||| |||||||| Sbjct 1291 TGAATAAGTAAAGAAACTATAAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 1235 Query 244 TTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||| ||| | ||| ||||||| ||| ||||||||||||||||||||||| Sbjct 1234 TTATTCTACACC-CTCTATGTCTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGT 1176 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1175 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 1116 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1115 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1056 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 996 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 936 Query 543 G 543 | Sbjct 935 G 935 >seq6738 Length=1121 Score = 363 bits (402), Expect = 5e-98 Identities = 301/375 (80%), Gaps = 38/375 (10%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | ||| | Sbjct 540 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 481 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 480 CAAACCGAGGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 421 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 420 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 361 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATG 301 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCG 458 ||||||||||||||||||||||||||||||||| || Sbjct 300 CGCGTCACTAATTAGATGACGAGGCATTTGGCT-------------------------CG 266 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 265 CCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 206 Query 519 CACATTGCGTCAACA 533 ||||||| ||||||| Sbjct 205 CACATTGTGTCAACA 191 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 845 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 786 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 785 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 739 >seq7156 Length=1025 Score = 336 bits (372), Expect = 7e-90 Identities = 194/199 (97%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1025 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATT 966 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 906 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 905 CCCGCCGTTGACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 846 Query 515 AAATCACATTGCGTCAACA 533 ||||||||||| ||||||| Sbjct 845 AAATCACATTGTGTCAACA 827 >seq3381 Length=2517 Score = 293 bits (324), Expect = 8e-77 Identities = 170/175 (97%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 299 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 298 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTGACCCGCGCTTACTT 239 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 238 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 184 >seq15766 Length=61583 Score = 196 bits (216), Expect = 2e-47 Identities = 173/217 (80%), Gaps = 13/217 (6%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | ||| | Sbjct 4648 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 4589 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | |||||||||||||||||||||| | ||| || ||| | | Sbjct 4588 CAAACCGAGGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCTTTACACCGCCA 4529 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| Sbjct 4528 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTTATTATTCCAAGCCCGTTCCCT 4469 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 ||||||||||||||| ||||||||||||||||||||| Sbjct 4468 TGGCTGTGGTTTCGCCAGATAGTAGATAGGGACAGTG 4432 >seq7068 Length=1402 Score = 190 bits (210), Expect = 7e-46 Identities = 173/218 (79%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | ||| | Sbjct 304 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 363 Query 230 GAAACGG-----------CT-CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 |||| | || |||||||||||||||||||| | ||| | ||| | | Sbjct 364 CAAACCGAGGTCTAATATCTACCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCC 423 Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 || ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| Sbjct 424 AGATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCC 483 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||||||||||||||||||||||||||||||||||| Sbjct 484 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 521 >seq7184 Length=1086 Score = 107 bits (118), Expect = 6e-21 Identities = 118/158 (75%), Gaps = 13/158 (8%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC--C 229 ||||| || || | ||||||| |||| ||||| |||||||||||||| | ||| | Sbjct 928 GTTCCATTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGGCGATAC 987 Query 230 GAAACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||| | |||||||||||||||||||||| | ||| | ||| | | Sbjct 988 CAAACCGAGGTCTAATATCTCCCACTTATTCTACACCTCTTATGTCTCCTTACACTGCCA 1047 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT 316 || ||||||||||||||| ||||||||||||||||||| Sbjct 1048 GATTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCCGCT 1085 Score = 84.2 bits (92), Expect = 7e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 621 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 680 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC-AATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| | |||||| Sbjct 681 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCTAATGTC 728 >seq20300 Length=19866 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11519 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 11469 >seq7475 Length=1137 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 835 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 894 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 895 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 941 >seq7165 Length=1015 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 737 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 796 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||| ||||| ||||||| Sbjct 797 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCTACCTGGCAATGTC 843 >seq3219 Length=1006 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 521 TCGTTAATCCATTCATGCGCGTCACTATCTAGATGACGAGGCATTTGGCT 472 >seq18679 Length=1273 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 385 TTAATCCATTCATGCGCG--TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||| || |||||||| |||||| ||||||||||| || |||||||||||||||| | Sbjct 1098 TTAATC-ATGCATGCGCGCGTCACTA-TTAGATGACGATGCGTTTGGCTACCTTAAGATA 1155 Query 443 GTCATAGTTA 452 ||||||||| Sbjct 1156 ATCATAGTTA 1165 >seq18613 Length=1033 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 385 TTAATCCATTCATGCGCG--TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||| || |||||||| |||||| ||||||||||| || |||||||||||||||| | Sbjct 202 TTAATC-ATGCATGCGCGCGTCACTA-TTAGATGACGATGCGTTTGGCTACCTTAAGATA 259 Query 443 GTCATAGTTA 452 ||||||||| Sbjct 260 ATCATAGTTA 269 >seq7320 Length=1040 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Minus Query 385 TTAATCCATTCATGCGCG--TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||| || |||||||| |||||| ||||||||||| || |||||||||||||||| | Sbjct 252 TTAATC-ATGCATGCGCGCGTCACTA-TTAGATGACGATGCGTTTGGCTACCTTAAGATA 195 Query 443 GTCATAGTTA 452 ||||||||| Sbjct 194 ATCATAGTTA 185 >seq6834 Length=1027 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 385 TTAATCCATTCATGCGCG--TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||| || |||||||| |||||| ||||||||||| || |||||||||||||||| | Sbjct 24 TTAATC-ATGCATGCGCGCGTCACTA-TTAGATGACGATGCGTTTGGCTACCTTAAGATA 81 Query 443 GTCATAGTTA 452 ||||||||| Sbjct 82 ATCATAGTTA 91 >seq2849 Length=1202 Score = 77.0 bits (84), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 4/70 (6%) Strand=Plus/Minus Query 385 TTAATCCATTCATGCGCG--TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||| || |||||||| |||||| ||||||||||| || |||||||||||||||| | Sbjct 1202 TTAATC-ATGCATGCGCGCGTCACTA-TTAGATGACGATGCGTTTGGCTACCTTAAGATA 1145 Query 443 GTCATAGTTA 452 ||||||||| Sbjct 1144 ATCATAGTTA 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634826863712