Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 549 2e-151
seq1557 428 4e-115
>seq1555
Length=7220098
Score = 549 bits (608), Expect = 2e-151
Identities = 1192/1770 (67%), Gaps = 29/1770 (2%)
Strand=Plus/Plus
Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140
|| |||||||| || ||||| ||||| | |||||| | ||||||||||| ||||| ||
Sbjct 5750477 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 5750536
Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200
|| || || ||| | || || || || || | | ||| |||| || |||||||||
Sbjct 5750537 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCC 5750596
Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCATGTC 65259
||||| || || ||||||||||||||||| ||| |||| ||||||||| || ||||| |
Sbjct 5750597 ACATGTATGTTGAACGACTGACTCTGATCTATG-AACGCACCACGATCGGCGGCCATTTT 5750655
Query 65260 AATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318
||| | ||| | | || || ||||| || ||||| ||||| || |||| |
Sbjct 5750656 AATCGTG-GACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGCACCTTCTGGG 5750714
Query 65319 GAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACT 65378
| || |||||||| || | || || | | | || || | || ||| |
Sbjct 5750715 GGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATGATCTGGTTCTTCATGTCGT 5750774
Query 65379 CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACT 65438
| |||||| ||| ||| | || | | | ||| ||| | |||| || ||||| |
Sbjct 5750775 CGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATT 5750834
Query 65439 CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGT 65498
|||||||||| || || ||| || ||||| | ||| ||| || ||||||||| |||
Sbjct 5750835 CGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGT 5750894
Query 65499 TGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558
|||| | || || || ||||||||||| ||||||||||| || | || ||||| || |
Sbjct 5750895 TGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGA 5750954
Query 65559 ATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGA 65618
|||| | | | |||| | ||||| | ||||| ||||| |||| ||| |
Sbjct 5750955 CACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACA--GGTT---CGTTGG 5751009
Query 65619 CATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAAC 65678
|| || | |||||| || | |||| |||| | || |||| || | |
Sbjct 5751010 CA-CCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 5751068
Query 65679 TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAA 65738
| ||||| | || || || ||| |||| ||||||| || | ||| || | ||||
Sbjct 5751069 TTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAA 5751128
Query 65739 TGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCA 65798
|||| ||||| || | |||| | || || || ||||| |||||||| | || ||
Sbjct 5751129 TGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCA 5751188
Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858
| || | || | || || | || |||| ||||| || | |||||| || | |||||
Sbjct 5751189 TGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAAT 5751248
Query 65859 TGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGC 65918
|||| || ||||| || | || || || |||||||| || || || | |||
Sbjct 5751249 TGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTT 5751308
Query 65919 GTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCG 65977
|| || | | || | | | | || || |||||| | || ||
Sbjct 5751309 TGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTA-AAATCATACGTCTTC------TCC 5751361
Query 65978 GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATC 66037
|| ||| || ||| ||| ||||| | || || | ||||||||| || |||
Sbjct 5751362 GGCGTGACGAACATG------TTG---AGGGCGATGGAGGCCAAGTTGCAGACTGCAATC 5751412
Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCC 66097
|| || || | || ||| || || ||||| ||||||| || ||||| |||||||||
Sbjct 5751413 TCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCC 5751472
Query 66098 AAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCG 66157
| |||||| || || ||||| | ||||| || |||||| | | |||||||||| | |||
Sbjct 5751473 ACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCG 5751532
Query 66158 GTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC 66217
||||| ||||| | |||||||||||| ||| || | | ||||| ||||| ||
Sbjct 5751533 GTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG 5751592
Query 66218 GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCG 66277
|||| ||| | | ||||| | ||||| || | |||||| || ||||| ||||||
Sbjct 5751593 GCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCG 5751652
Query 66278 GACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGA 66337
|||| ||||||||||| || ||||| |||||||||||||| | || || ||
Sbjct 5751653 TGGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGT 5751712
Query 66338 CGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCA 66397
||| || ||||| |||||||| |||||||| || ||||||||||| || | ||| ||
Sbjct 5751713 TTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCT 5751772
Query 66398 ATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAG 66456
|| ||||| || || || || ||||||||||||| || | ||||| |||||||
Sbjct 5751773 TTGCCCGTG-TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAA 5751831
Query 66457 GTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATT 66516
|| ||||| || | || ||| |||||||| || || || || || || || |||||
Sbjct 5751832 ATAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATT 5751891
Query 66517 GTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGG 66576
|||||||| | || ||| || || | ||| || || | ||||| |||||| || |
Sbjct 5751892 ATTGAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGA 5751951
Query 66577 GGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
|| || ||| || || || || || || || || |||||||| | ||| |||||
Sbjct 5751952 GGTGCCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGAT 5752011
Query 66637 GGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAG 66696
|| || | |||| | | ||| ||||| || |||||||| | | ||||||||
Sbjct 5752012 CATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAG 5752071
Query 66697 GAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGC 66756
||| | || || | || || | |||||| || | || || ||||| | ||
Sbjct 5752072 AAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGC 5752131
Query 66757 GTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTC 66816
||||| ||||| | |||| ||| || || || | | | ||||| || | ||
Sbjct 5752132 ATGCGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTC 5752191
Query 66817 GCCATGAATCCCGAGTGCACATCGCATCAG 66846
||||| || |||| ||| ||||||||
Sbjct 5752192 TCCATGGATTCCGATCGCAACGCGCATCAG 5752221
>seq1557
Length=14215200
Score = 428 bits (474), Expect = 4e-115
Identities = 585/812 (72%), Gaps = 11/812 (1%)
Strand=Plus/Minus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| || ||||| |||||||| || |||||||| ||||||||||| ||| | | |||||
Sbjct 5422487 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACT 5422428
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
|| | || | | || || | |||||||| || ||| |||| ||||| ||||
Sbjct 5422427 GGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCG 5422368
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || || || ||||| || ||||| | |||| || ||| ||||||||||| |
Sbjct 5422367 CCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCA 5422308
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
||||||| || || ||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 5422307 CGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 5422248
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||||||| | ||||| || |||||| |||| | | || || ||||||| |
Sbjct 5422247 ACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACG 5422188
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| ||||| ||||| ||||| |||||||| || || || |||||| | |||||| |
Sbjct 5422187 CTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTC-- 5422130
Query 61466 GTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523
| ||| |||| | || || || || | | || ||||| | || ||||| | ||
Sbjct 5422129 ATCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTT 5422070
Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583
||||| || || ||| | || || ||| | ||||| || || || ||||| || |
Sbjct 5422069 CTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATT 5422010
Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643
||||||| ||| ||| |||| || |||||||||||| |||| || || ||||| || |
Sbjct 5422009 GACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCT 5421950
Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703
| | ||| | | | |||||| | || || | ||||| | ||||| | ||
Sbjct 5421949 GATGTTCCAGC---ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCG 5421893
Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763
|| ||||| | || || ||||| || || || || || |||||||| | |||||
Sbjct 5421892 CGACGCGGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGG 5421833
Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
||||||||| | || ||||| ||||| ||||| || || || |||||| || | || ||
Sbjct 5421832 CATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGA 5421773
Query 61824 TTTGG--GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
|||| || ||| |||||| || || |||||||||||| | |||||||| |||||
Sbjct 5421772 GTTGGGCGTTGGAA--AGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATA 5421715
Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913
|||||||| || ||||| || |||||||||||
Sbjct 5421714 TCGCTGGACGGAAAGACCAACTTTTTCGAGAA 5421683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397496623001840
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