Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq762 111 2e-22 seq736 109 5e-22 seq1353 102 8e-20 seq1352 102 8e-20 seq1349 102 8e-20 seq1334 102 8e-20 seq7 102 8e-20 seq25 89.7 5e-16 seq1350 78.8 9e-13 >seq762 Length=13283 Score = 111 bits (122), Expect = 2e-22 Identities = 134/179 (75%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || | |||||| |||||||||| | |||||||||||| |||| Sbjct 9262 CGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTGGCACGCTGCGAAAAGCCACGG 9203 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 ||| || || | ||||||||| ||||||||||||||||||||| | | | Sbjct 9202 GGAGCCGCGAGTAGGCTTTGATCCGTGGATATCCGAATGGGGCAACCCCCTCGCAAGAGG 9143 Query 127 ATATATCA--TAACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| || | |||| || |||| ||| ||||||||||||||||| |||| Sbjct 9142 ATCCCTCACTGAATACATAGGTGTGGGAGGCAAACCCGGGGAACTGAAACATCTCAGTA 9084 >seq736 Length=32925 Score = 109 bits (120), Expect = 5e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || | |||||| |||||||||| | |||||||||||| |||| Sbjct 30091 CGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTGGCACGCTGCGAAAAGCCACGG 30032 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || || | ||||||||| ||||||||||||||||||||| Sbjct 30031 GGAGCCGCGAGTAGGCTTTGATCCGTGGATATCCGAATGGGGCAACCC 29984 >seq1353 Length=15711 Score = 102 bits (112), Expect = 8e-20 Identities = 139/191 (73%), Gaps = 15/191 (8%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 4861 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 4802 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC------- 113 || ||||| || | | ||||||||| |||| |||||||||||||||| Sbjct 4801 CTGTGGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCCACCCAG 4742 Query 114 CGAT--ATATTG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 |||| ||| | || | || |||| | || | |||||||| ||||||||||| Sbjct 4741 CGATGGGTATCGTGATCTGAATACATAGGGTTACG----AGGCGAACCCGGGGAACTGAA 4686 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 4685 ACATCTCAGTA 4675 >seq1352 Length=32338 Score = 102 bits (112), Expect = 8e-20 Identities = 139/191 (73%), Gaps = 15/191 (8%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 24783 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 24724 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC------- 113 || ||||| || | | ||||||||| |||| |||||||||||||||| Sbjct 24723 CTGTGGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCCACCCAG 24664 Query 114 CGAT--ATATTG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 |||| ||| | || | || |||| | || | |||||||| ||||||||||| Sbjct 24663 CGATGGGTATCGTGATCTGAATACATAGGGTTACG----AGGCGAACCCGGGGAACTGAA 24608 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 24607 ACATCTCAGTA 24597 >seq1349 Length=20638 Score = 102 bits (112), Expect = 8e-20 Identities = 139/191 (73%), Gaps = 15/191 (8%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 6773 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 6832 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC------- 113 || ||||| || | | ||||||||| |||| |||||||||||||||| Sbjct 6833 CTGTGGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCCACCCAG 6892 Query 114 CGAT--ATATTG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 |||| ||| | || | || |||| | || | |||||||| ||||||||||| Sbjct 6893 CGATGGGTATCGTGATCTGAATACATAGGGTTACG----AGGCGAACCCGGGGAACTGAA 6948 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 6949 ACATCTCAGTA 6959 >seq1334 Length=31116 Score = 102 bits (112), Expect = 8e-20 Identities = 139/191 (73%), Gaps = 15/191 (8%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 9506 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 9565 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC------- 113 || ||||| || | | ||||||||| |||| |||||||||||||||| Sbjct 9566 CTGTGGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCCACCCAG 9625 Query 114 CGAT--ATATTG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 |||| ||| | || | || |||| | || | |||||||| ||||||||||| Sbjct 9626 CGATGGGTATCGTGATCTGAATACATAGGGTTACG----AGGCGAACCCGGGGAACTGAA 9681 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 9682 ACATCTCAGTA 9692 >seq7 Length=30121 Score = 102 bits (112), Expect = 8e-20 Identities = 139/191 (73%), Gaps = 15/191 (8%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 15749 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 15690 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC------- 113 || ||||| || | | ||||||||| |||| |||||||||||||||| Sbjct 15689 CTGTGGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCCACCCAG 15630 Query 114 CGAT--ATATTG-GAGATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAA 169 |||| ||| | || | || |||| | || | |||||||| ||||||||||| Sbjct 15629 CGATGGGTATCGTGATCTGAATACATAGGGTTACG----AGGCGAACCCGGGGAACTGAA 15574 Query 170 ACATCTAAGTA 180 |||||| |||| Sbjct 15573 ACATCTCAGTA 15563 >seq25 Length=66545 Score = 89.7 bits (98), Expect = 5e-16 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 56519 GGCATTCGGTGGATGCCTTGGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 56460 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||| || | | ||||||||| |||| ||||||||||||||||| Sbjct 56459 CT-GTGGGAGCCGCGAGCAGGCATTGATCCGCAGATTTCCGAATGGGGCAACCC 56407 >seq1350 Length=24878 Score = 78.8 bits (86), Expect = 9e-13 Identities = 89/114 (78%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || |||||||| ||||||||| | ||||||| ||| Sbjct 1753 GGCATTCGGTGGATGCCT-GGCACTAGGAGGCGACGAAGGACGTAGCACGCTGCGATAAG 1811 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || ||| | || | | ||||||||| |||| ||||||||||||||||| Sbjct 1812 CTGTGGG-AGCCGCGAGCA-GCATTGATCCGCAGAT-TCCGAATGGGGCAACCC 1862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476793736636