Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1353 107 2e-21 seq1352 107 2e-21 seq1349 107 2e-21 seq1334 107 2e-21 seq762 107 2e-21 seq736 107 2e-21 seq25 107 2e-21 seq7 107 2e-21 seq1350 82.4 6e-14 >seq1353 Length=15711 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 5900 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 5959 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 5960 CCTTCCTCCGGCTTGTCAC 5978 >seq1352 Length=32338 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 25822 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 25881 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 25882 CCTTCCTCCGGCTTGTCAC 25900 >seq1349 Length=20638 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 5734 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 5675 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 5674 CCTTCCTCCGGCTTGTCAC 5656 >seq1334 Length=31116 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 8468 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 8409 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 8408 CCTTCCTCCGGCTTGTCAC 8390 >seq762 Length=13283 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 10306 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 10365 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 10366 CCTTCCTCCGGCTTGTCAC 10384 >seq736 Length=32925 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 31127 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 31186 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 31187 CCTTCCTCCGGCTTGTCAC 31205 >seq25 Length=66545 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 57506 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 57565 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 57566 CCTTCCTCCGGCTTGTCAC 57584 >seq7 Length=30121 Score = 107 bits (118), Expect = 2e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 16788 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGCCATGAGGACTTGACGTCATCCCCA 16847 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 16848 CCTTCCTCCGGCTTGTCAC 16866 >seq1350 Length=24878 Score = 82.4 bits (90), Expect = 6e-14 Identities = 68/79 (86%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||| | Sbjct 773 CCATTGTAGCACGTGTGTAGCCCAGGACATAAGGGC-ATGAG-ACTTGACGTCATCCC-A 717 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||| Sbjct 716 CCTTCCTCCGGCTTGTCAC 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994535320