Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1353 122 6e-26 seq1352 122 6e-26 seq1350 122 6e-26 seq1349 122 6e-26 seq1334 122 6e-26 seq736 122 6e-26 seq25 122 6e-26 seq7 122 6e-26 seq762 109 4e-22 >seq1353 Length=15711 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 2584 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 2643 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 2644 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 2703 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 2704 ACA-GCCGGTTTCCGACCG 2721 >seq1352 Length=32338 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 22504 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 22563 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 22564 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 22623 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 22624 ACA-GCCGGTTTCCGACCG 22641 >seq1350 Length=24878 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 3996 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 3937 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 3936 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 3877 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 3876 ACA-GCCGGTTTCCGACCG 3859 >seq1349 Length=20638 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 9051 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 8992 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 8991 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 8932 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 8931 ACA-GCCGGTTTCCGACCG 8914 >seq1334 Length=31116 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 11783 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 11724 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 11723 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 11664 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 11663 ACA-GCCGGTTTCCGACCG 11646 >seq736 Length=32925 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 27841 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 27900 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 27901 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 27960 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 27961 ACA-GCCGGTTTCCGACCG 27978 >seq25 Length=66545 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 54247 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 54306 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 54307 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 54366 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 54367 ACA-GCCGGTTTCCGACCG 54384 >seq7 Length=30121 Score = 122 bits (134), Expect = 6e-26 Identities = 112/139 (81%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 13470 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 13529 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| || ||| |||||||| ||| || ||| |||||||||||| | Sbjct 13530 CTTTCGTCTCTGCTCGAGCTGTCACTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCA 13589 Query 120 TCACTACGATTTCCGACCG 138 || || |||||||||| Sbjct 13590 ACA-GCCGGTTTCCGACCG 13607 >seq762 Length=13283 Score = 109 bits (120), Expect = 4e-22 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||||| || Sbjct 6995 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGGCCGA 7054 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||| || || ||| ||||| || ||| || ||| |||||||||||| Sbjct 7055 CTTTCGTCTCTGATCGAGCTGTCACTCTCACAGTCAGGCGGGCTTATGCCATTGCACT 7112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351995525200