Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq991 518 3e-142 seq185 468 4e-127 >seq991 Length=691118 Score = 518 bits (574), Expect = 3e-142 Identities = 1233/1852 (67%), Gaps = 35/1852 (2%) Strand=Plus/Plus Query 65080 GACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTT 65139 ||| |||||||| || || || ||||||| ||| || | ||||||||||| ||||| || Sbjct 357719 GACGGTGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTT 357778 Query 65140 GAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGC 65199 |||||||| ||| | || ||||| || || | | || |||| || |||||||| Sbjct 357779 AAGGCCAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGC 357838 Query 65200 CACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTC 65259 ||||| || || ||||| ||||||||||||||| | ||||||||| |||||||| | Sbjct 357839 AACATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTT 357898 Query 65260 AATGATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318 |||| | ||| | || | |||||||| || ||||||||||| || || | | Sbjct 357899 AATGGTG-GACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGG 357957 Query 65319 GAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACT 65378 | || |||| || | ||| | ||| ||||| | | ||| || | || ||| | Sbjct 357958 GGATGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCAT 358017 Query 65379 CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACT 65438 | |||||| | | || | |||| | || ||| | || | || ||||| | Sbjct 358018 CATCCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATT 358077 Query 65439 CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGT 65498 ||||||| || || || || |||||| || | ||| || || |||||||| | | Sbjct 358078 CGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTAT 358137 Query 65499 TGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558 |||| | || |||||||| ||||| ||||||||||| ||||||| || ||||| | | Sbjct 358138 TGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGA 358197 Query 65559 ATCCGTTCATTTCAATGTTGTGACGCAAT----TCGTCCCAGTTCCACATCGGTTTATCG 65614 || | |||| || | ||| | | | | |||||| ||| | |||| || Sbjct 358198 CACCATG--TTTCT-TGATC-GACTCCTTCAGCTTGGCCCAGTCCCAGA--GGTT---CG 358248 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 | | | || | ||||||||| | || || |||| | || | || || | Sbjct 358249 TTGGGA-CCTTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCG 358307 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 | | || ||| || || ||| ||| |||| ||| || | || |||||| || || Sbjct 358308 TATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAA 358367 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || || || || || || | | || || || |||||| ||||| ||||| || | Sbjct 358368 TAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAAT 358427 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | |||||| | || | || || | ||| |||| ||||| || ||||| ||||| | | Sbjct 358428 CTCATCAGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTC 358487 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 ||||| || | ||||| || | || || |||||||| || ||||| ||||| | Sbjct 358488 AAATTTGATTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGA 358547 Query 65915 TTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTT-TAGGACG 65973 || | ||| | || | || ||| || || || || | | Sbjct 358548 TTCTTAGCCACTGTCTTAGTGA--CCTCC------TTCAGTTTCTTAAAGTCGTACGTCT 358599 Query 65974 A-TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 || || || ||| ||| || || || | ||||| |||||||| || | Sbjct 358600 TCTCAGGGGT---------CACGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGG 358650 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | || ||||| || | | |||||| || ||||| ||||| ||||||||||| |||| Sbjct 358651 CGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGG 358710 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | |||||| ||||| ||||| | ||||||||||||||| ||| ||| || ||| Sbjct 358711 TGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGAT 358770 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTAC 66212 |||| ||||| || || | ||||||||||||| ||| || | | ||||| ||||| | Sbjct 358771 TGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGGGACTGAGCCTTAACCGTCC 358830 Query 66213 GTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATA 66272 | || | |||| | ||||| | ||| | || || || || ||||| | Sbjct 358831 GATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAA 358890 Query 66273 CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTA 66332 | || ||| | ||||||||||| || |||||||||||||| | ||| || | Sbjct 358891 CATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAA 358950 Query 66333 CACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCT 66392 | || |||||| |||||||||||||||||||| || || | |||||| || || | || Sbjct 358951 CGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCT 359010 Query 66393 CCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTT 66452 | || | ||| || || || || | ||| ||||| | |||| |||||| || | Sbjct 359011 CTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCT 359070 Query 66453 CCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGA 66512 ||| ||||||||| || | ||| || ||||||||||| || || ||||| || || | Sbjct 359071 CCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTA 359130 Query 66513 CATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGA 66572 ||||||||||||| |||| ||| || ||||| || || || | ||||| ||||| | Sbjct 359131 CATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATA 359190 Query 66573 TGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCG 66632 | | || || || || || || |||||||| ||||| || || |||| ||| | Sbjct 359191 TCGAGGTGCCCTTGGCACGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGG 359250 Query 66633 AGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGG 66692 | || ||||| | |||| | | ||| || || || || || || | || | Sbjct 359251 AAATCATGGCACAGTGTTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAG 359310 Query 66693 TCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTG 66752 |||| ||| |||| || ||||| ||| | ||||| || | ||| || ||||||| Sbjct 359311 TCAGAAGGAAGCAGGACGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTG 359370 Query 66753 TAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 ||||| || ||| | | |||| ||||||| ||||| | | ||||| || | Sbjct 359371 AGGCGTGTGTGAAGAAGCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATAT 359430 Query 66813 TTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCC 66872 ||| ||||| || || | || ||||| || | | ||| ||||| ||||| | | Sbjct 359431 CTTCACCATGGATTCCAATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCT 359490 Query 66873 GATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || | | | || || || ||||| |||||||| | ||||| || Sbjct 359491 TGCCATTACTCTTAAGCAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATA 359542 >seq185 Length=662383 Score = 468 bits (518), Expect = 4e-127 Identities = 618/847 (73%), Gaps = 15/847 (2%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || ||||| ||||| ||||| ||||| ||| ||||||| || | | |||| Sbjct 114816 AGGCCGAGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACT 114757 Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 || | || ||| || | |||| |||||||| |||||| |||||||||||||| Sbjct 114756 GGCATCGCCTTAAGGAT-GACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTGCC 114698 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || |||||||| ||||| | | || |||||| ||||||||||| | Sbjct 114697 GCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGATC 114638 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | ||||| || || ||||| ||||||||||| ||||||||||| ||||| ||||||||| Sbjct 114637 ACAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGATG 114578 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 |||||||| || ||||| || |||||| |||| | | | || || |||| ||| Sbjct 114577 TACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTAAT 114518 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 ||||||||||| || |||||||||||||| ||||| || |||||| | |||||| || Sbjct 114517 GCCATCGAGACCATGCCGGCGGTGAAGCGCAAAGCTGACTGGGCCCTGTCCTGGATCTCC 114458 Query 61465 AGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 | ||| | || | ||||| || || | | |||||||| | |||||||| | | Sbjct 114457 --TCCAAGTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCATCT 114400 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||||| || |||||| | || || ||| ||||||| || || || ||||| || | Sbjct 114399 TCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCC 114340 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTT 61642 |||||||| ||| ||| | || || ||||||||||| |||| || || ||||| || Sbjct 114339 TGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGGTGC 114280 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG-GAGCGTGTGGGTGAGATTGTT 61701 || | ||| | | |||||||| | || ||| || | ||||| | ||||| || Sbjct 114279 TGATGTTCCAGC---ATCTGGTGCAGCGACCG-CGTCGCGAGCGCATCATCGAGATCATT 114224 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 ||||| || || || |||||||| || |||| || || ||||||| || ||| Sbjct 114223 CGTGACGCTGTGGACATTGAACAGGAGTTCTTGACCGATGCCCTGCCCGTGAATCTGATC 114164 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 |||||||| || | |||||||||||||| ||||| ||||| || || || ||| | ||| Sbjct 114163 GGCATGAACTGCGACCTAATGTCGCAGTACATTGAGTTTGTGGCTGATCGCCTGCTCGTC 114104 Query 61822 GATTTGG--GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 || |||| || ||| ||||| || || || ||||| || | |||||||| |||| Sbjct 114103 GAGTTGGGCGTTGGAA--AAATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGA 114046 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGG 61939 | |||||||| |||||||| || ||||| ||||| || ||||| || || || ||| Sbjct 114045 TCTCGCTGGACGGCAAGACCAACTTTTTTGAGAAGAAGGTGGGCGAGTACCAGCGCATGG 113986 Query 61940 GTGTAGC 61946 | || || Sbjct 113985 GCGTCGC 113979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561429691840