Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq5743 131 3e-28 >seq5743 Length=1090 Score = 131 bits (144), Expect = 3e-28 Identities = 183/254 (72%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 82 CCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAGGCCC 141 ||||||| |||||| | | |||||| | || |||| || ||||| | || Sbjct 1089 CCTTTTGTATAATGGGTCAGCGAGTTTCT-GTTTGCAGCAAGCTTAAG-----CCGGTAG 1036 Query 142 GT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAA 200 || ||| || || ||||||||| || || |||||| | ||||| |||| |||| |||| Sbjct 1035 GTGTAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCTAGTTGCTGGCAGAAGACCCGAA 976 Query 201 ACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAAC 260 ||| |||||||| ||| | |||| ||||| |||||||| || |||||| |||||| Sbjct 975 ACCGAGTGATCTAGCCATGGCCAGGCTGAAGGTGCGGTAACACGCACTGGAGGGCCGAAC 916 Query 261 CGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACT 320 |||||||| | ||||| | || |||||||||||||||||||||||| Sbjct 915 TCACGCCTGTTGAAAAAGTCGGAGATGAGCTGTGGCTAGGGGTGAAAGGCCAATCAAACT 856 Query 321 GGGAAATAGCTCGT 334 |||||||||| || Sbjct 855 CGGAAATAGCTGGT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972725882368