Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5512 141 1e-31 seq6745 96.9 6e-18 seq3543 75.2 2e-11 >seq5512 Length=200 Score = 141 bits (156), Expect = 1e-31 Identities = 94/104 (90%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC----CACCAACTAAGAACGGCC 214 ||||||||||||||||||||||||||||||||||| | ||| |||||||||||| | Sbjct 78 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCAGACAAATCACGAACTAAGAACGGGC 137 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 138 ATGCACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 181 >seq6745 Length=1790 Score = 96.9 bits (106), Expect = 6e-18 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 734 AACTAAGAACGGCCATGCACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 677 >seq3543 Length=6891 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| || |||||| || | |||||| |||||||||||||| |||| |||||||||| ||| Sbjct 555 TCATTGAAGCGCGTGTTCAGCCCAGGACATCTAAGGGCATTACAGGCCTGTTATTG-CTC 613 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | || ||||| || Sbjct 614 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTATGAAGCAAG 657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796741188939