Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq5743 277 7e-72 >seq5743 Length=1090 Score = 277 bits (306), Expect = 7e-72 Identities = 313/414 (76%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| |||||| || ||||| Sbjct 679 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAATACTTCCGGGTATTCG 737 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| || Sbjct 738 GAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCCC 797 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||| || |||| | |||| ||| |||||| |||||||||||||| | || Sbjct 798 CGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGAG 857 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| ||||| || |||||||| ||| || Sbjct 858 TTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCTCCGACTTTTTCAACAGGCGTGAGT 917 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| || ||||| ||||| |||| |||||| ||||||||| | || Sbjct 918 TCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTTT 977 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 |||||||| | || ||| | ||||||||||| ||||||||||||||||| |||| || Sbjct 978 CGGGTCTTCTGCCAGCAACT-AGACGCCCTATTCAGACTCGCTTTCGCTACGCCTACACC 1036 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 ||| |||| || || || ||| |||||||| | | |||| | ||||||| Sbjct 1037 TACCGGCTTAAGCTTGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGG 1089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817461517056