Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5743 156 1e-35 >seq5743 Length=1090 Score = 156 bits (172), Expect = 1e-35 Identities = 174/220 (79%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 9 CCACAGGTCAT-TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGT 67 |||||| |||| |||| ||||||||||| | || |||||| |||||||| || || Sbjct 881 CCACAGCTCATCTCCG---ACTTTTTCAACAGGCGTGAGTTCGGCCCTCCAGTGCGT-GT 936 Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 |||| ||||| || |||| |||| || |||||| | |||||| ||||||| | | |||| Sbjct 937 TACCGCACCTT-CAGCCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCT-TCTGCCAG 992 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCT-CCCCTATTCGGTTAAGCTT 186 | ||||||||||||| | |||||||| ||||||||||||| | |||| | |||||| | Sbjct 993 CAACTAGACGCCCTATTCAGACTCGC-TTTCGCTACGCCTACACCTACCGGCTTAAGC-T 1050 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGT 226 ||| | | | || |||||||||||||||||||||||| Sbjct 1051 TGCTGCAAACAGAAACTCGCTGACCCATTATACAAAAGGT 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241505402496