Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2511 219 1e-54 seq4561 95.1 4e-17 seq7020 91.5 5e-16 seq5712 87.8 6e-15 >seq2511 Length=208 Score = 219 bits (242), Expect = 1e-54 Identities = 136/146 (93%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 63 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 122 Query 414 ATGACGAGGCATTTGGC-----TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 123 ATGACGAGGCATTTGGCCTCGTGACCTTAAGAGAGTCATAGTTACTCCCGCCGTTGACCC 182 Query 469 GCGCTTGGTTGAATTTCTTCACTTTG 494 |||||| |||||||||||||||||| Sbjct 183 GCGCTTACTTGAATTTCTTCACTTTG 208 >seq4561 Length=817 Score = 95.1 bits (104), Expect = 4e-17 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 60 >seq7020 Length=260 Score = 91.5 bits (100), Expect = 5e-16 Identities = 50/50 (100%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 260 >seq5712 Length=945 Score = 87.8 bits (96), Expect = 6e-15 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 240 TCGTTAATCCATTCATGCGCGTCACTAATTCGATGACGAGGCATTTGGCTA 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635075414112