Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 553 1e-152 seq2 437 7e-118 >seq1 Length=23539531 Score = 553 bits (612), Expect = 1e-152 Identities = 1243/1851 (67%), Gaps = 35/1851 (2%) Strand=Plus/Plus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || |||||||| || ||||| ||||| | |||||| | ||||||||||| ||||| || Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || || || ||| | || || || || || | | ||| |||| || ||||||||| Sbjct 10003463 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCC 10003522 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCATGTC 65259 ||||| || || ||||||||||||||||| ||| |||| ||||||||| || ||||| | Sbjct 10003523 ACATGTATGTTGAACGACTGACTCTGATCTATG-AACGCACCACGATCGGCGGCCATTTT 10003581 Query 65260 AATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318 ||| | ||| | | || || ||||| || ||||||||||| || |||| | Sbjct 10003582 AATCGTG-GACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTTCTGGG 10003640 Query 65319 GAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACT 65378 | || |||||||| || | || || | | | || || | || ||| | Sbjct 10003641 GTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCATGTCGT 10003700 Query 65379 CTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACT 65438 | |||||| ||| ||| | || | | | ||| ||| | |||| || ||||| | Sbjct 10003701 CGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAATT 10003760 Query 65439 CGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGT 65498 |||||||||| || || ||| || ||||| | ||| || || ||||||||| ||| Sbjct 10003761 CGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGT 10003820 Query 65499 TGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCA 65558 |||| | || || || ||||||||||| ||||||||||| || | || |||||| || | Sbjct 10003821 TGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGA 10003880 Query 65559 ATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGA 65618 |||| | | | |||| | ||||| | ||||| ||||| |||| ||| | Sbjct 10003881 CACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACA--GGTT---CGTTGG 10003935 Query 65619 CATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAAC 65678 || || | |||||| || | |||| |||| | || |||| || | | Sbjct 10003936 CA-CCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 10003994 Query 65679 TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAA 65738 | ||||| || || || ||| |||| ||||||| || | ||| || | |||| Sbjct 10003995 TTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAA 10004054 Query 65739 TGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCA 65798 | || || || || | |||| | || || || ||||| |||||||| | || || Sbjct 10004055 TCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCA 10004114 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 | || | || | || || | || |||| ||||| || | ||||||||| | ||||| Sbjct 10004115 TGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAAT 10004174 Query 65859 TGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGC 65918 |||| || ||||| || | || || ||||||||||| || || || | ||| Sbjct 10004175 TGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTT 10004234 Query 65919 GTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCG 65977 || || | | || | | | | || || ||||||| | || || Sbjct 10004235 TGGTAACTATCTTTGTGACTTCCTTGAGCTTCTT-GAAATCATACGTCTTC------TCC 10004287 Query 65978 GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATC 66037 || ||| || ||| ||| ||||| | || || | ||||||||| || ||| Sbjct 10004288 GGCGTGACGAACATG------TTG---AGGGCGATGGAGGCCAAGTTGCAGACTGCAATC 10004338 Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCC 66097 || || || | || ||| || || ||||| ||||||| || ||||| |||||||| Sbjct 10004339 TCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCT 10004398 Query 66098 AAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCG 66157 | |||||| || || ||||| | ||||| || |||||| | | |||||||||| | ||| Sbjct 10004399 ACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCG 10004458 Query 66158 GTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC 66217 ||||| ||||| | |||||||||||| ||| || | | ||||| ||||| || Sbjct 10004459 GTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG 10004518 Query 66218 GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCG 66277 |||| ||| | | ||||| | ||||| || | |||||| || ||||| |||||| Sbjct 10004519 GCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCG 10004578 Query 66278 GACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGA 66337 |||| |||||||||||| || ||||| |||||||||||||| | || || |||| Sbjct 10004579 TGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGT--TGGCCTCCACG- 10004635 Query 66338 CG---CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCC 66394 || ||| || ||||| |||||||| |||||||| || ||||||||||| || | ||| Sbjct 10004636 CGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCT 10004695 Query 66395 TCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTC 66453 || || ||||| || || || || ||||||||||||| || | ||||| ||||| Sbjct 10004696 TCTTTGCCCGTG-TTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTC 10004754 Query 66454 CAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGAC 66513 ||| || ||||| || | || || |||||||| || || || || || ||||| || Sbjct 10004755 CAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCAC 10004814 Query 66514 ATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGAT 66573 ||| || ||||| | || ||| || || | ||| || || | ||||| |||||| || Sbjct 10004815 ATTATTAAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAAT 10004874 Query 66574 GGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGA 66633 | || || ||| || || || || || || || || |||||||| | ||| || Sbjct 10004875 CGAGGTGCCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGA 10004934 Query 66634 GATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGT 66693 ||| || || | |||| | | ||| ||||| || |||||||| || | ||||| Sbjct 10004935 GATCATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGT 10004994 Query 66694 CAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGT 66753 ||| ||| | || || | || || | |||||| || | || || ||||| | Sbjct 10004995 CAGAAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGA 10005054 Query 66754 AGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTT 66813 || || || ||||| | |||| ||| || || || | | | ||||| || | Sbjct 10005055 TGCATGTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATC 10005114 Query 66814 TTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCG 66873 || ||||| || |||| || |||||||| | | || || || || | | | Sbjct 10005115 CTCTCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTT 10005174 Query 66874 ATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || | | | | ||||| || ||||||||||||| ||||| || Sbjct 10005175 TCCGTTTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATA 10005225 >seq2 Length=21544594 Score = 437 bits (484), Expect = 7e-118 Identities = 587/812 (72%), Gaps = 11/812 (1%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || ||||| |||||||| || |||||||| ||||||||||| ||| | | ||||| Sbjct 8575854 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACT 8575795 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || | | || || | |||||||| || ||| |||| |||||||||| Sbjct 8575794 GGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCG 8575735 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || ||||| || ||||| | |||| || ||| ||||||||||| | Sbjct 8575734 CCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCA 8575675 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 ||||||| || || ||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 8575674 CGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 8575615 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||||||| | ||||| || |||||| |||| | | || || ||||||| | Sbjct 8575614 ACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACG 8575555 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | ||||| ||||| ||||| |||||||| || || || |||||| | |||||| | Sbjct 8575554 CTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTC-- 8575497 Query 61466 GTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 || ||| |||||| || || || || | | || ||||| | || ||||| | || Sbjct 8575496 GTCCAAGTCGGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTT 8575437 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 ||||| || || ||| | || || ||| | ||||| || || || ||||| || | Sbjct 8575436 CTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATT 8575377 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTT 61643 ||||||| ||| ||| |||| || |||||||||||| |||| || || ||||| || | Sbjct 8575376 GACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCT 8575317 Query 61644 GCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCG 61703 | | ||| | | | |||||| | || || | ||||| | ||||| | || Sbjct 8575316 GATGTTCCAGC---ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCG 8575260 Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 || ||||| | || || ||||| || || || || || |||||||| | ||||| Sbjct 8575259 CGACGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGG 8575200 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||| || | || ||||| ||||| ||||| || || || |||||| || | || || Sbjct 8575199 CATGAACTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGA 8575140 Query 61824 TTTGG--GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 |||| || ||| |||||| || || |||||||||||| | |||||||| ||||| Sbjct 8575139 GTTGGGCGTTGGAA--AGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATA 8575082 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||||||||| ||||| || |||||||| || Sbjct 8575081 TCGCTGGATGGAAAGACCAACTTTTTCGAAAA 8575050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531083202160