Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 seq2 89.7 2e-12 >seq1 Length=23539531 Score = 109 bits (120), Expect = 2e-18 Identities = 186/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692 || || ||||| || ||||| |||||||||||| ||| || | || | | || | Sbjct 10669213 ACTCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATC 10669154 Query 21693 GCCTGCTGCAAAACTGGGGTCGA-GATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCC 21751 || | ||| || | || |||||| || |||| ||||||||||| ||||| Sbjct 10669153 ACCAGTTGC-------GGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCC 10669101 Query 21752 ATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCT 21811 |||||| | ||||| || || ||||| |||||||| || || |||| ||||| | Sbjct 10669100 ATGCTTCACCTCAAAATCAACATCTGAGTGATTGAAGAGGACGACGCCGAGATTGCCGCG 10669041 Query 21812 ATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871 |||| |||||| || |||||||| || || | |||||||| || || || || Sbjct 10669040 ATAATCCTCGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCTAGCCCGGA 10668981 Query 21872 TCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900 || || || ||||| |||||| ||||| Sbjct 10668980 TCGTGGGGCTACGCGTCCGTAGGAGCCCT 10668952 >seq2 Length=21544594 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC-GGGCGTCTCGCCGGCCGC 449064 ||||| || |||||| | | || ||||||||||| || || |||| | |||| | Sbjct 8633011 GTCATACGGGACGGGAATCCGTGGGGGTTCATGATCATATCCGGGCAGAT-GCCGAAGTC 8632953 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 || |||||||| ||||| | | || | || ||| | ||||| || || ||||| || Sbjct 8632952 ATTAAAGGGCATATCCTCCTGTTCAACAATCAAGCCAGTCACGCCTTTTTGCCCGTGTCG 8632893 Query 449125 GCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGATG 449182 || |||||||||||| |||||| | ||||| |||||||| |||||||||| Sbjct 8632892 AGAGCTGAACTTGTCCCCGATCTCGGGTATACGTGTCTGGCGCAGCAGGATCTTGATG 8632835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084530727382962