Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 2e-18
seq2 89.7 2e-12
>seq1
Length=23539531
Score = 109 bits (120), Expect = 2e-18
Identities = 186/269 (69%), Gaps = 8/269 (3%)
Strand=Plus/Minus
Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692
|| || ||||| || ||||| |||||||||||| ||| || | || | | || |
Sbjct 10669213 ACTCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATC 10669154
Query 21693 GCCTGCTGCAAAACTGGGGTCGA-GATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCC 21751
|| | ||| || | || |||||| || |||| ||||||||||| |||||
Sbjct 10669153 ACCAGTTGC-------GGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCC 10669101
Query 21752 ATGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCT 21811
|||||| | ||||| || || ||||| |||||||| || || |||| ||||| |
Sbjct 10669100 ATGCTTCACCTCAAAATCAACATCTGAGTGATTGAAGAGGACGACGCCGAGATTGCCGCG 10669041
Query 21812 ATAAGAACTGTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871
|||| |||||| || |||||||| || || | |||||||| || || || ||
Sbjct 10669040 ATAATCCTCGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCTAGCCCGGA 10668981
Query 21872 TCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900
|| || || ||||| |||||| |||||
Sbjct 10668980 TCGTGGGGCTACGCGTCCGTAGGAGCCCT 10668952
>seq2
Length=21544594
Score = 89.7 bits (98), Expect = 2e-12
Identities = 128/178 (72%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC-GGGCGTCTCGCCGGCCGC 449064
||||| || |||||| | | || ||||||||||| || || |||| | |||| |
Sbjct 8633011 GTCATACGGGACGGGAATCCGTGGGGGTTCATGATCATATCCGGGCAGAT-GCCGAAGTC 8632953
Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124
|| |||||||| ||||| | | || | || ||| | ||||| || || ||||| ||
Sbjct 8632952 ATTAAAGGGCATATCCTCCTGTTCAACAATCAAGCCAGTCACGCCTTTTTGCCCGTGTCG 8632893
Query 449125 GCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGATG 449182
|| |||||||||||| |||||| | ||||| |||||||| ||||||||||
Sbjct 8632892 AGAGCTGAACTTGTCCCCGATCTCGGGTATACGTGTCTGGCGCAGCAGGATCTTGATG 8632835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084530727382962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |