Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4772 158 2e-36 seq8168 154 3e-35 seq5061 154 3e-35 seq4896 154 3e-35 >seq4772 Length=290822 Score = 158 bits (174), Expect = 2e-36 Identities = 171/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 225299 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 225357 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| | ||||| ||| | ||| | ||| ||||| |||||||||| | || | Sbjct 225358 AATGAAATTATCAACGTGTT--TTTCCTAGACCGAGAGGTCCGGGTAATCTTCTGAACCA 225415 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || | | || ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 225416 CTTTATTACTTGGGATTGTGAACTGAAACTGTT-CACATGAACTCGGAATTCCCAGTAAG 225474 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| ||||||||||||||| |||||||| Sbjct 225475 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGGCCTTTGTA 225517 >seq8168 Length=950709 Score = 154 bits (170), Expect = 3e-35 Identities = 172/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTT--AGATGTTCTGGGCCGCACGCGCGCT 163 || ||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||| Sbjct 560542 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTTTAGATGTCCTGGGCTGCACGCGCGCT 560600 Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 ||| ||| || ||||| || || ||| | ||| ||||| |||||| | | || Sbjct 560601 ACAATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAAC 560658 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | || || |||| ||||| | | | || || | || | | | ||| ||||| || |||| Sbjct 560659 CACTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTA 560717 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 560718 AGTGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 560762 >seq5061 Length=120080 Score = 154 bits (170), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 113 GGCAATAACAGGTCTGTGATGCCCTT--AGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||| Sbjct 66010 GGCAATAACAGGTCTGTGATGCCCTTTTAGATGTCCTGGGCTGCACGCGCGCTACAATGA 65951 Query 171 CAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC 230 || ||||| || || ||| | ||| ||||| |||||| | | || | || || Sbjct 65950 AAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCACTTTC 65893 Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 |||| ||||| | | | || || | || | | | ||| ||||| || |||||| | | Sbjct 65892 ATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAGTGTGA 65834 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | | ||| |||||||||||||||||||||||| Sbjct 65833 GTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 65796 >seq4896 Length=24350 Score = 154 bits (170), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 113 GGCAATAACAGGTCTGTGATGCCCTT--AGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||| Sbjct 5513 GGCAATAACAGGTCTGTGATGCCCTTTTAGATGTCCTGGGCTGCACGCGCGCTACAATGA 5454 Query 171 CAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC 230 || ||||| || || ||| | ||| ||||| |||||| | | || | || || Sbjct 5453 AAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCACTTTC 5396 Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 |||| ||||| | | | || || | || | | | ||| ||||| || |||||| | | Sbjct 5395 ATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAGTGTGA 5337 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | | ||| |||||||||||||||||||||||| Sbjct 5336 GTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 5299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947117783040