Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1 114 5e-20 seq5978 91.5 6e-13 >seq1 Length=22559587 Score = 114 bits (126), Expect = 5e-20 Identities = 188/269 (70%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692 || |||||||| ||| |||||||||||||||||| ||| || ||| ||| | | Sbjct 20854259 ACGCCCGTGGAACCAAATCCTCCCTCGCCGCGCTCGGTGTC------CTCCAGCTTGTCC 20854206 Query 21693 GCCTGCTGCAAAACTGGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCA 21752 || ||||| | || |||||||||| |||| ||||| ||||| |||||| Sbjct 20854205 ACCAACTGCAGTTCCGGATAGAAGATGCGTTCGCAAATGAACTGGGCAATGCGGTCGCCA 20854146 Query 21753 TGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTA 21812 |||| | || || ||| ||| ||||| |||||||| || || || | ||||| | Sbjct 20854145 CGCTTCACCTCGAACTCCACGTCCGAGTGATTGAAGAGGACGACGCCAAGGTTGCCGCGG 20854086 Query 21813 TAAGAACT-GTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871 | || || ||| || || ||||| || || |||| |||||| | |||||| || || Sbjct 20854085 T-AGTCCTCGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTTACGGCCAGTCCAGA 20854027 Query 21872 TCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900 || || || || || |||||| ||||| Sbjct 20854026 TCGCGGGGCCACCCGTCCGTAGGAGCCCT 20853998 >seq5978 Length=4749261 Score = 91.5 bits (100), Expect = 6e-13 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161 ||||||| |||||||| ||||||||||||||| || ||| |||| |||| || | Sbjct 3458498 TCTCGTCGCCGTCAAAATCGGCGTTGTAGGGCGATGTACACGAGAGGTTCATGCGGAACG 3458439 Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220 | | | ||| || | | ||| | |||| |||| || | ||||| |||||| Sbjct 3458438 TCGACCA----GGGCAGCACTTTCACCCTGTGCCCCATCATACTCATCTTGTGCAGCGTG 3458383 Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280 ||||| || ||| ||| | | ||| | ||||||||||||| ||||||||||| |||| Sbjct 3458382 GGCTGTCGGTTGAAGATCACCAGATCGTCGTCGCGCAAGTGCCGCTCCACCTTGTAGCCG 3458323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084501696086640