Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 5e-20
seq5978 91.5 6e-13
>seq1
Length=22559587
Score = 114 bits (126), Expect = 5e-20
Identities = 188/269 (70%), Gaps = 8/269 (3%)
Strand=Plus/Minus
Query 21633 ACACCCGTGGAGCCATATCCTCCCTCGCCGCGCTTGGTCTCGCCGAGCTCGCCCTTTTGC 21692
|| |||||||| ||| |||||||||||||||||| ||| || ||| ||| | |
Sbjct 20854259 ACGCCCGTGGAACCAAATCCTCCCTCGCCGCGCTCGGTGTC------CTCCAGCTTGTCC 20854206
Query 21693 GCCTGCTGCAAAACTGGGGTCGAGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCA 21752
|| ||||| | || |||||||||| |||| ||||| ||||| ||||||
Sbjct 20854205 ACCAACTGCAGTTCCGGATAGAAGATGCGTTCGCAAATGAACTGGGCAATGCGGTCGCCA 20854146
Query 21753 TGCTTGATTTCAAAGTCCTGGTCAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTA 21812
|||| | || || ||| ||| ||||| |||||||| || || || | ||||| |
Sbjct 20854145 CGCTTCACCTCGAACTCCACGTCCGAGTGATTGAAGAGGACGACGCCAAGGTTGCCGCGG 20854086
Query 21813 TAAGAACT-GTCGACGACCCCGGCGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGA 21871
| || || ||| || || ||||| || || |||| |||||| | |||||| || ||
Sbjct 20854085 T-AGTCCTCGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTTACGGCCAGTCCAGA 20854027
Query 21872 TCTGGGAGCGACGCGGCCGTAGTGGCCCT 21900
|| || || || || |||||| |||||
Sbjct 20854026 TCGCGGGGCCACCCGTCCGTAGGAGCCCT 20853998
>seq5978
Length=4749261
Score = 91.5 bits (100), Expect = 6e-13
Identities = 129/180 (72%), Gaps = 5/180 (3%)
Strand=Plus/Minus
Query 351102 TCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCTGGGTGACCGACGGGTTGATGCCGATGG 351161
||||||| |||||||| ||||||||||||||| || ||| |||| |||| || |
Sbjct 3458498 TCTCGTCGCCGTCAAAATCGGCGTTGTAGGGCGATGTACACGAGAGGTTCATGCGGAACG 3458439
Query 351162 TGTAGCCCCGCGGGTTGCGCCT-CACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTG 351220
| | | ||| || | | ||| | |||| |||| || | ||||| ||||||
Sbjct 3458438 TCGACCA----GGGCAGCACTTTCACCCTGTGCCCCATCATACTCATCTTGTGCAGCGTG 3458383
Query 351221 GGCTGGCGATTGTGGATGATGATGTCGCCATCGCGCAAGTGCCTCTCCACCTTGTCGCCG 351280
||||| || ||| ||| | | ||| | ||||||||||||| ||||||||||| ||||
Sbjct 3458382 GGCTGTCGGTTGAAGATCACCAGATCGTCGTCGCGCAAGTGCCGCTCCACCTTGTAGCCG 3458323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084501696086640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |