Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3320 125 3e-26 seq3092 125 3e-26 seq1799 125 3e-26 seq1030 125 3e-26 seq1123 120 1e-24 seq3385 114 5e-23 >seq3320 Length=2060 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 1973 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 1914 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 1913 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 1854 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 1853 TAGGGGCGA 1845 >seq3092 Length=1632 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 452 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 393 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 392 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 333 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 332 TAGGGGCGA 324 >seq1799 Length=1118 Score = 125 bits (138), Expect = 3e-26 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 536 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 595 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| |||||| ||||||| ||| || | Sbjct 596 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAACGAAAGTTGAAAAGAACTCTGAAT 655 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 656 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 689 >seq1030 Length=1680 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 1044 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 1103 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 1104 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 1163 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 1164 TAGGGGCGA 1172 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| Sbjct 337 TTCCAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAA 396 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| | ||||||||||| ||||||| |||| ||||| ||||||| ||| Sbjct 397 CTAAATATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACT 456 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 || | ||||||||||| || |||||||| || | | ||| Sbjct 457 CTGAATAGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 496 >seq1123 Length=1389 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | | | ||| ||||| ||| | Sbjct 1021 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTAATCAGGTTGAAGTCAGGG 1080 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 1081 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 1140 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 1141 TAGGGGCGA 1149 Score = 82.4 bits (90), Expect = 3e-13 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 40 GAGTCGAGTTGT-TTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCT-TCTAAAG-CT 95 |||||| || | ||| | |||||| ||||| |||| |||||| || |||||| || Sbjct 309 GAGTCGTGTCGACTTGATAGTGCAGCACTAAAGTGGGTGGTAAAACTCCGTCTAAAAACT 368 Query 96 AAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAA-GATGAAAAGCACT 153 ||| | ||| ||||||||||| ||||||| |||| |||| | ||||||| ||| Sbjct 369 AAAATATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAAGTTGAAAAGAACT 428 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTG 185 || | ||||||||||| || |||||||| || Sbjct 429 CTGAATAGAGAGTTAAACAGTACGTGAAACTG 460 >seq3385 Length=1144 Score = 114 bits (126), Expect = 5e-23 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 182 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 123 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGT-AGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||||||||||| |||||| | |||| ||||| ||||||| ||| || | Sbjct 122 ATAACCATGAGACCGATAGTAAACAAGTAACCGTGAGGGAAAGTTGAAAAGAACTCTGAA 63 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 62 TAGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079877027150