Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1413 154 2e-35 >seq1413 Length=14959 Score = 154 bits (170), Expect = 2e-35 Identities = 186/249 (75%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 4989 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTTC-GACTTCGCAG 5047 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | |||||||||||| |||||||||||| ||| || ||| ||| |||| || || Sbjct 5048 AGCCCTGTGTTTTTACTAAACAGTCGCTACCCCCTGGTCTGTGC------CACCCGC-CA 5100 Query 121 ACACGTCGTTCACCAGCAGTGGCACCC-CTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | | ||| ||| || || | | ||| |||||||||||| | | |||||| | Sbjct 5101 A----TGGTTGCCCACCAACGGGTCTCGCTTATCCCGAAGTTACACGAGTAATTTGCCTA 5156 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | || |||| | | | |||||| |||||||||||| | ||||||||||||| Sbjct 5157 GTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATTCTCTACCAGTCCACCTGTGTCGG 5216 Query 240 TTTACGGTA 248 ||| |||| Sbjct 5217 TTTCGGGTA 5225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694361434109