Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1413 441 3e-121 >seq1413 Length=14959 Score = 441 bits (488), Expect = 3e-121 Identities = 458/592 (77%), Gaps = 19/592 (3%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | ||| |||| | ||| | |||| | ||| ||| | |||||| || ||||| Sbjct 5755 TCGACAATGGACCTTAG-CACCCACTGTCTGTCTGCCAGGCTAT-ACTTCCGGGTATTCG 5812 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCC-TAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || |||||| | ||||||||| ||| ||||||||||||||||| || Sbjct 5813 GAGTTTGGTTAGGTTTGGTAAGGCTTTGGGCCCCCCTAGCCCATCCAGTGCTCTACCCCC 5872 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||| || |||| | |||| ||| |||||| |||||||||||||| | || Sbjct 5873 CGGGGTAAATACCTGACGGTCTACCTCAATAGATTTCGCGGAGAACCAGCTATTTCCGAG 5932 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| |||||||| |||||||| |||||| Sbjct 5933 TTTGATTGGCCTTTCACCCCTAGCCACAGCTCATCCCCGACTTTTTCAACAGGCGTGGGT 5992 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||| || ||||| ||||| |||| |||||| ||||||||| | || Sbjct 5993 TCGGCCCTCCAGTGCGTGTTACCGCACCTTCAGCCTGGCCATGGCTAGATCACTCGGTTT 6052 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 |||||||| | || |||| ||||||||||| ||||||||||||||||| |||| || Sbjct 6053 CGGGTCTTCTGCCAGCAACTC-GACGCCCTATTCAGACTCGCTTTCGCTACGCCTACACC 6111 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||| |||| ||||| || ||| |||||||| | | |||| | ||||||| ||||| Sbjct 6112 TATCGGCTTAAGCTCGCTGCA-AACAGAAACTCGCTGACCCATTATACAAAAGGTACGCC 6170 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 |||||| | ||| || |||||||| | ||||||||| |||||||||| Sbjct 6171 GTCACC----CCATAAGAG--------GCTCCGACTGCTTGTAGGCATTCGGTTTCAGGT 6218 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||| |||||||||||||||||||||||||||| | ||| Sbjct 6219 -CTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTA 6277 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 |||||||||| ||||||||||||||| |||||||||| ||| |||| || Sbjct 6278 TCGGTCACCAGGGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGAC 6329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817495796992