Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5134 558 3e-154 seq5516 426 1e-114 >seq5134 Length=897107 Score = 558 bits (618), Expect = 3e-154 Identities = 1242/1852 (67%), Gaps = 29/1852 (2%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||||||| ||||| ||||||| ||| || | || || ||||| || || Sbjct 539123 ATCCACTGTGAACTGGATAGCATTTGCAGCCGGCTTTGTGCGCAGGTAATACATCCCTGT 539182 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||||| ||||| ||| | ||| || || || || | | ||| | ||||||||||| Sbjct 539183 TTTGAGACCAGCTTTCCAGGAATAAAAGTGTATGGACGTCAGCTTTCCGTAATTCGGCTC 539242 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255 |||||||| ||||| |||||||||||||| || ||| |||| ||| |||||||| |||| Sbjct 539243 TGCCACATGAATATTGAACGACTGACTCTGGTCTATG-AACGCACCCCGATCTGCGGCCA 539301 Query 65256 TGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 | | |||| | ||| || |||| || ||||| |||||||||||||| || |||| Sbjct 539302 TTTTAATGGTG-GACTTCACCGAGATTTCCCACACGGTCTTGTACAGATCGCGAACCTTC 539360 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATC 65374 ||||| ||| || | |||| || || | | | || || | || ||| Sbjct 539361 TGGGGAATGGACTCGATATTTTGGATGGAGCCCCTGCTCGAGATGATCTGGTTCTTCATG 539420 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || |||||| ||| || | || | | ||| ||| | || | || ||| Sbjct 539421 TCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTCAGCAAATGATGGTTAACCACCTGG 539480 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||| ||||| || || | | || || || | ||| ||| || |||||||| Sbjct 539481 AACTCGCCAGACAGCACGCGCCTGGTGTAAATATTTGTGGTGTAGGGCTCGAAGGATTCG 539540 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| | || || |||||||| || || |||||||||||||| | || ||||| Sbjct 539541 TTGTTGCCCATTATCTGAGCAGTAGAGGCCGTGGGCATGGGAGCGACAAGCAGGGAGTTC 539600 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || | |||| | | ||| | || || | ||||| ||||| | || || Sbjct 539601 CGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTTTGCCAGTCCCACA---GATT--CG 539655 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 | | | ||| | |||||| || | ||||| |||| | || | || || | Sbjct 539656 TTGGC-TCCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTCG 539714 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 | | ||||| ||| || || || |||| ||||||| || || ||| | | Sbjct 539715 TAGGTTTCGTAGGGTCCTTCGATCTGCGCCAGTTCGCAGCTGGCTTCCAGGGCGCCGTAG 539774 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 || ||||||||||| || | | || | | |||||| ||||| || || || | Sbjct 539775 TAGATGGTCTCGAATATCTGCTGGTTCAAGAGGCCTGCCTCCTCGCTTTCATAGGGGAAT 539834 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | ||| || | | | ||| || | || ||||| || || || | || ||||| | | Sbjct 539835 CGCATGAGAATCAGGGCGTCAGCGAATCCCTGAACACCGATGCCCACAGGGCGATGCCTC 539894 Query 65855 AAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || ||||| | ||| ||||| || | || || | ||||| ||||| || || | Sbjct 539895 AAGTTGGA-CTTCTTTGCCTCTGGCAGGGGATAAAAGTTGATGTCGATGATCTTGTTGAG 539953 Query 65914 ATTGCGTGTCACCA-CATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 ||| |||||| | || | | | | || || ||| ||| | || Sbjct 539954 ATTTTTGGTCACCGTCTTGGTAACTTCCTTGAGCTTCTT-GAAGTCATACGTCTTC---- 540008 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 ||||| ||| |||||| | ||||| | || || | ||||||||| | Sbjct 540009 --TCGGGTGTG---------ACAAACATATTGAGGGCGATCGAGGCCAAGTTGCAGACGG 540057 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | ||||| ||||| | || |||||||| ||||||||||||| || ||||| |||| Sbjct 540058 CAATCTCATCAGGCGAGGAGTACTCGACGATTTCGGTGCACAAGTTGCTGCACTTGATGG 540117 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | |||||| || || ||||| || ||||| ||||||||| ||| |||||| || Sbjct 540118 TGCCGACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCCTTGAACAGCATGTAGGGGT 540177 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTAC 66212 | || || || || || | ||||||||||||| |||||| | | ||||||||||| | Sbjct 540178 TCCCAGTTTCCACCTGAGCCTCAATGATGGCGAACCAAAGGGACTGAGCCTTCACCGTTC 540237 Query 66213 GTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATA 66272 | || | ||| | | ||||| | ||||| | |||||| || ||||| | Sbjct 540238 GGTTGGCACGACCCTCTTGCTCGTACTTCTCGTACAACCTTTCGAACTCATCGCCCCACA 540297 Query 66273 CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTA 66332 | ||| || | || || ||||| || ||||| ||||||||||| |||| || | Sbjct 540298 CATCGTGAAGGCCGGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCGA 540357 Query 66333 CACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCT 66392 | || |||||| ||||| |||||||| ||||||||||| |||||||| || || | || Sbjct 540358 CGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGGTTCT 540417 Query 66393 CCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTT 66452 |||| ||||| || || || || ||||||||||||| ||| | ||||| || | Sbjct 540418 CCTCCTTGCCGGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCT 540477 Query 66453 CCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGA 66512 ||||||| ||||| || | ||| ||| |||||||| || || || || || || || | Sbjct 540478 CCAGGTAAATGGCAAAGGCGCCGGGACGCTTGCCGCCGCCCTGATCCACATAACGTGCCA 540537 Query 66513 CATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGA 66572 ||||||||||||| | || ||| || ||||| || || || |||| || |||||| | Sbjct 540538 CATTGTTGAAGACCCTCAGCATGGGAACGAGGCCATTGGAGGTGCCGTTCGTGCCGCAAA 540597 Query 66573 TGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCG 66632 | | || || ||||| || ||| ||||| || || || || || |||| ||||| Sbjct 540598 TCGAGGTGCCCTTCGCCCGGATGCAGTGGACATTTAGCCCGATGCCGCCAGCCGACTTCG 540657 Query 66633 AGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGG 66692 |||| || || | |||| | | ||| ||||| || |||||||| || | |||| Sbjct 540658 AGATCATGGCGCACTGCTCCACGGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGG 540717 Query 66693 TCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTG 66752 | |||||| | || || || || || ||||| || | || || ||||| | Sbjct 540718 TGAGGAGGAAACACGAGGACAGCTGCGGCCGATTCGTGGCAGCGGCAAAAAGTGTGGGCG 540777 Query 66753 TAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT 66812 || || || |||||| | |||| | ||| ||||| || | | | ||||| || | Sbjct 540778 ACGCATGGGTGAAGTAACGCTCCGACAAGAGATTATACGTTTCCACGGCTGCATCGATAT 540837 Query 66813 TTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCC 66872 || || || || |||| || |||||||| | || || || || ||| | | | Sbjct 540838 CCTCCCCGTGTATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGGCGCTCGGCGATCT 540897 Query 66873 GATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || | | || || ||||| ||||| |||||||||| |||||||| Sbjct 540898 TGCCGTTTCTCTTCAGCAAATAGGAACGTTCGAGGGTCTTGAACCCAAAGTA 540949 >seq5516 Length=367667 Score = 426 bits (472), Expect = 1e-114 Identities = 606/847 (72%), Gaps = 9/847 (1%) Strand=Plus/Minus Query 61103 AAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG 61162 || |||| || || || |||||||| ||||||||||| ||| ||||||| ||| ||| | Sbjct 270522 AACAGGCTGAGGCCTCTTTCTGGACAGTGGAGGAGGTGGATCTGTCCAAGGACCTGACCG 270463 Query 61163 ACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| | || | | | || | || ||||| || ||| |||| ||||| | Sbjct 270462 ACTGGCACCGCCTGAAGGATGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCG 270403 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||| || || || ||||| |||||||| | | || || ||| |||||||| || Sbjct 270402 CCGCCTCCGATGGCATCGTAAATGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTTCAGA 270343 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | ||||||| || || |||||||||||||| || ||||||||||| || |||||||||| Sbjct 270342 TCACGGAGGCACGCTGCTTCTACGGCTTCCAAATCGCCATGGAGAACGTGCACTCGGAGA 270283 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 |||||||||| || ||||| || |||||| |||| | | | || ||| |||||| Sbjct 270282 TGTACAGTGTGCTGATCGACACATACATCCGGGACCCGCACCAGCGGGAATACCTGTTCA 270223 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA 61462 | |||||||||||||| ||||| |||||||| || ||||| ||||| | |||||| Sbjct 270222 ACGCCATCGAGACGATGCCGGCTGTGAAGCGCAAGGCGGACTGGGCTCTTTCCTGGATCT 270163 Query 61463 CCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || | ||| |||| | || || || || | | || || || | |||||||| | Sbjct 270162 CC--TCCAAGTCGGCCAATTTCGGAGAGCGCATCATTGCCTTCGCTGCCGTCGAGGGCAT 270105 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||||| || || ||| | || || ||| ||||||| || || || ||||| || Sbjct 270104 CTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGG 270045 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGT 61640 ||||||||| ||| ||| | || || || ||||||||| | || || || ||||| || Sbjct 270044 ACTGACCTTCTCCAACGAGCTTATCTCCCGAGACGAGGGCCTTCACTGCGACTTTGCCGT 269985 Query 61641 TTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG-GAGCGTGTGGGTGAGATTG 61699 || | ||| | | || ||||| | || || || | ||||| | |||||| Sbjct 269984 GCTGATGTTCCAGCACT---TGGTGCAGCGACC-CCGCCGCGAGCGCATCATTGAGATCA 269929 Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 | || || || || | || |||||||| || || || || || ||||||| |||| Sbjct 269928 TCCGAGATGCAGTGGCCATTGAACAGGAGTTCCTCACCGATGCCCTGCCCGTGAACCTCA 269869 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 ||||||||||||| | || ||||||||||| || || || || || || || || ||| Sbjct 269868 TCGGCATGAATTGCGATCTGATGTCGCAGTACATCGAGTTCGTGGCGGATCGCTTGCTGG 269809 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 | || ||||| | |||||| |||||||| ||||| || | |||||||| |||| Sbjct 269808 TGGAATTGGGCGTCGGCAAGATCTACAATACGAAGAACCCCTTCAACTTCATGGAGATGA 269749 Query 61880 TTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGG 61939 | |||||||| |||||||| || || || ||||| || ||||| || || ||| ||| Sbjct 269748 TCTCGCTGGACGGCAAGACCAACTTCTTTGAGAAGAAGGTGGGCGAGTACCAGCGTATGG 269689 Query 61940 GTGTAGC 61946 | || || Sbjct 269688 GAGTGGC 269682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540221551120