Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20takahashii_20[refseq_20GCF_5F000224235.1_202013-03-04] 5,733 sequences; 182,106,768 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5539 96.9 1e-14 seq5516 96.9 1e-14 seq3719 84.2 9e-11 >seq5539 Length=990776 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 349078 GAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAA 349137 || |||||||||||| | |||| |||| ||||||||||| | || || |||||||| Sbjct 426226 GATAATCTCCTTGAGACGCGGCACTCCCAACGTCACGTTCTTCGACGACACACCGGCAAA 426285 Query 349138 GTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGAT 349197 |||||||| | || |||| ||| ||| |||||| || | | |||| | || | | Sbjct 426286 ATGGAAGGTATTCAGTGTCATCTGTGTGGCGGGCTCACCCAAACTCTGGGCGGCCAAGGC 426345 Query 349198 GCCTACCATCTCGCCGGG 349215 ||| |||||||||||||| Sbjct 426346 GCCCACCATCTCGCCGGG 426363 >seq5516 Length=367667 Score = 96.9 bits (106), Expect = 1e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC-GGGCGTCTCGCCGGCCGC 449064 ||||| || || ||| || |||| |||||||| || ||||| |||| | ||| | Sbjct 339106 GTCATACGAGAGGGGAAGCCATGGGGGTTCATAATCATGTCCGGGCAGAT-GCCAAAGTC 339048 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 ||||||||||||||||| | | || | || ||| | || ||||| |||||||| || Sbjct 339047 ATTGAAGGGCATGTCCTCCTGCTCAACAATCAAGCCCGTCACTCCCTTTTGGCCGTGCCG 338988 Query 449125 GCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGAT 449181 || ||||||||| || |||||| |||| || |||||||| ||||||||| Sbjct 338987 CGAGCTGAACTTGTCTCCGATCTCGGGAATGCGCGTCTGGCGCAGCAGGATCTTGAT 338931 >seq3719 Length=165196 Score = 84.2 bits (92), Expect = 9e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 21715 AGATGCGTTCCAGGATGAGTTGGGCGATGCGATCGCCATGCTTGATTTCAAAGTCCTGGT 21774 ||||||| || |||| ||||||||||| ||||| |||| | || || ||| || Sbjct 79854 AGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCGCGCTTCACCTCGAACTCCACGT 79795 Query 21775 CAGAGTGGTTGAAGAGCACCACCCCGACCTTGCCCCTATAAGAACTGTCGACGACCCCGG 21834 | ||||| || || || || || || | ||||| | ||| ||| || || |||| Sbjct 79794 CCGAGTGATTAAACAGGACAACGCCCAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGG 79735 Query 21835 CGCCGACGTCGAGCCCGTTCTTCAAGGCCAGACCCGATCTGGGAGCGACGCGGCCGTAGT 21894 | || || |||| |||||||| |||||| || || | || || ||||| |||||| Sbjct 79734 CACCCACATCGATGAAGTTCTTCACGGCCAGTCCGGACCGCGGGGCCACGCGTCCGTAGG 79675 Query 21895 GGCCCT 21900 ||||| Sbjct 79674 AGCCCT 79669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084582332495934