Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3020 145 1e-32 seq10171 141 1e-31 seq3091 141 1e-31 seq3371 136 6e-30 seq3032 107 3e-21 seq10896 98.7 1e-18 seq11795 87.8 3e-15 seq2806 87.8 3e-15 >seq3020 Length=42005 Score = 145 bits (160), Expect = 1e-32 Identities = 177/229 (77%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| |||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 38619 GTACAAAGGCCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 38676 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 38677 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 38733 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 38734 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 38790 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||| ||||||||||| ||||| || Sbjct 38791 GCAGCCCAGGACATCTAAGGGCATCACACACCTGTTATTG-CTCAATCT 38838 >seq10171 Length=1662 Score = 141 bits (156), Expect = 1e-31 Identities = 176/229 (77%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || |||||| |||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 523 GTTCAAAGGACAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 466 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 465 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 409 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 408 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 352 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| ||||||||||||| |||||||||||||||| ||||| || Sbjct 351 GCAGCCCAGGACATCTAAGGGCACCACAGACCTGTTATTG-CTCAATCT 304 >seq3091 Length=48052 Score = 141 bits (156), Expect = 1e-31 Identities = 177/229 (77%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||| | ||||| |||||| | Sbjct 3398 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACAGTTACTGGGAATT-C 3455 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 3456 CAAGTTCATGTG-AACAGTTTCATTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 3512 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 3513 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 3569 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||| ||||||||| ||||| || Sbjct 3570 GCAGCCCAGGACATCTAAGGGCATCACAGA-CTGTTATTG-CTCAATCT 3616 >seq3371 Length=1135500 Score = 136 bits (150), Expect = 6e-30 Identities = 175/229 (76%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || |||||| |||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 157293 GTTCAAAGGACAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 157236 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 157235 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 157179 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| ||| ||| || ||||| ||| | || ||||| |||||| Sbjct 157178 TTACCCGGACCTTTCGGTATAGGAAATACAC--GTTGA-TACTTTCATTGTAGTGCGCGT 157122 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 157121 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 157074 Score = 102 bits (112), Expect = 1e-19 Identities = 91/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 94096 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 94152 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || || ||| |||||||||| ||||||||||||||||||| ||||| || Sbjct 94153 GCAGCTCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCT 94200 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 28525 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 28581 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || || ||| |||||||||| ||||||||||| ||||||| ||||| || Sbjct 28582 GCAGCTCAGGACATCTAAGGACATCACAGACCCGTTATTG-CTCAATCT 28629 >seq3032 Length=44882 Score = 107 bits (118), Expect = 3e-21 Identities = 92/109 (84%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 44592 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 44648 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||| ||||||||||||||||||| ||||| || Sbjct 44649 GCAGCCCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCT 44696 >seq10896 Length=1288 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | || ||| || ||||| ||| | || |||||||||| | Sbjct 286 TTACCCGGACCTCTCGGTCTAGAAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCAT 230 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||| ||||||||||||||||||| ||||| || Sbjct 229 GCAGCCCAGGACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCT 182 >seq11795 Length=1990 Score = 87.8 bits (96), Expect = 3e-15 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 ||||||| |||| |||| | ||| ||| || ||||| ||| | || |||| ||||||| Sbjct 1103 TTACCCGTACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCAATGTAACGCGCGT 1159 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||| || |||||||||||||||||||| |||||||||| Sbjct 1160 GCAGCC-AGGACATCTAAGGGCATCACAGATCTGTTATTGC 1199 >seq2806 Length=271964 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||| Sbjct 224186 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTGAGGGCATCACAGACCTGTTATTG-CTC 224244 Query 221 AAACT 225 || || Sbjct 224245 AATCT 224249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751901433950