Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3020 127 4e-27 seq3371 123 5e-26 seq3038 118 2e-24 seq2806 118 2e-24 seq3091 114 2e-23 seq3709 109 1e-21 seq12926 96.9 6e-18 seq2372 77.0 6e-12 >seq3020 Length=42005 Score = 127 bits (140), Expect = 4e-27 Identities = 184/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 39622 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 39563 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 39562 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 39504 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 39503 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 39444 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| | |||| Sbjct 39443 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCAAT-AACG 39385 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 39384 AAAGTTAGAGG 39374 >seq3371 Length=1135500 Score = 123 bits (136), Expect = 5e-26 Identities = 183/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||| ||||| ||||||||||| | |||||||||| ||| ||||| | |||| Sbjct 156295 TTACCTTGAACAAATTAGAGTGCTTTAAGCAGGCCTCAAATGCCTGAATATTCTGTGCAT 156354 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| |||| ||||||| || | | |||||| Sbjct 156355 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTTATTGGTTTTCAGATCAAGAGGTAATG 156413 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 156414 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 156473 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| |||| |||||||||||| ||||| Sbjct 156474 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGCTTTCATTAATCA-AGAACG 156532 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 156533 AAAGTTAGAGG 156543 Score = 122 bits (134), Expect = 2e-25 Identities = 185/253 (73%), Gaps = 13/253 (5%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | |||||||||| ||| ||||| | |||| Sbjct 29401 TTACTTTGAACAAATTAGAGTGATTTAAGCAGGCCTCAAATGCCTGAATATTCTGTGCAT 29342 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 29341 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 29283 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT- 246 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 29282 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTATGACGCGAGAGGTGAAATTCTTGGACC 29223 Query 247 -TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | || ||||| ||| |||||||| || |||| ||||||||||||||||| ||| Sbjct 29222 GTCGTT--AGACTTACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAA 29166 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 29165 CGAAAGTTAGAGG 29153 Score = 113 bits (124), Expect = 8e-23 Identities = 182/252 (72%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 105727 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 105668 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 105667 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 105609 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 105608 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 105549 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGT-TTTCATTAATCAGTGAAC 306 |||||||||| |||||||| || |||| ||||| |||| || |||| |||| Sbjct 105548 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTGTTTCTTTTATCA--GAAC 105491 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 105490 GAAAGTTAGAGG 105479 Score = 78.8 bits (86), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | || ||||| | |||| Sbjct 136287 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAAGGCCTGAATATTCTGTGCAT 136346 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | |||||| ||| ||||||| || | | |||||| Sbjct 136347 GGCATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTCAGATCAAGAGGTAATG 136405 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 136406 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 136465 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTT 276 | |||| |||| |||||||| || Sbjct 136466 TTCGTAAGAAAAACTTAAGCGAAAGCATT 136494 Score = 78.8 bits (86), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 || ||||||| ||||||||||| | ||||||||| | || ||||| | |||| Sbjct 147644 TTTCTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAAGGCCTGAATATTCTGTGCAT 147703 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | |||||| ||| ||||||| || | | |||||| Sbjct 147704 GGGATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTCAGATCAAGAGGTAATG 147762 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 147763 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 147822 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTT 276 | ||||| |||| |||||||| || Sbjct 147823 TTCGTAAGACAAACTTAAGCGAAAGCATT 147851 >seq3038 Length=48473 Score = 118 bits (130), Expect = 2e-24 Identities = 182/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 32522 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 32581 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| || | | ||||| ||| ||||||| || | | |||||| Sbjct 32582 GGGATAATGAAATAACACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 32640 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | | |||| | |||||||||||||||||| Sbjct 32641 ATTAATAGAAGCAGTTTGGGGGCATTACTATTACGACGCGAGAGGTGAAATTCTTGGACC 32700 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 32701 GTCCTAAGACTAACTTAAGCGAAAGCATTTGCCAAAAATGTTTTCATTAATCAG-GAACG 32759 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 32760 AAAGTTAGAGG 32770 >seq2806 Length=271964 Score = 118 bits (130), Expect = 2e-24 Identities = 182/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||| ||||| | ||||||||| | |||| ||||| | |||| Sbjct 225028 TTACTTTGAACAAATTTGAGTGCTTAAAGCAGGCTTCAAATGCTTGAATATTCTGTGCAT 224969 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 224968 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 224910 Query 189 ATTAATAGGGATAGTCGGGG-GTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||| | | |||||| | ||||||||| |||||||| Sbjct 224909 ATTAATAGAAGCAGTTTGGGCGCATTAGTATTACGACGCGAGAGGTGAATTTCTTGGACC 224850 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 224849 ACCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 224791 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 224790 AAAGTTAGAGG 224780 >seq3091 Length=48052 Score = 114 bits (126), Expect = 2e-23 Identities = 178/247 (72%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 4397 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 4338 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 | ||||| |||| ||| | | ||||| ||| ||||||| | | | |||||| Sbjct 4337 GCGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCACATCAAGAGGTAATG 4279 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 4278 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 4219 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || ||| ||||||||||||||||| ||||| Sbjct 4218 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCACAGATGTTTTCATTAATCACAGAACG 4159 Query 308 AAAGTTA 314 ||||||| Sbjct 4158 AAAGTTA 4152 >seq3709 Length=229446 Score = 109 bits (120), Expect = 1e-21 Identities = 180/251 (72%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||| ||| | ||| ||||| | |||| Sbjct 187780 TTACTTTGAACAAATTAGAGTGCTTAAAGCTGGCTTCAAATGCCTGAATATTCTGTGCAT 187721 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 187720 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 187662 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 187661 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTATGACGCGAGAGGTGAAATTCTTGGACC 187602 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| |||| | |||||| || |||| ||||||||||||||||| ||| | Sbjct 187601 GTCGTAAGACAAACTTAAGAGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAAAG 187543 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 187542 AAAGTTAGAGG 187532 >seq12926 Length=5628 Score = 96.9 bits (106), Expect = 6e-18 Identities = 176/248 (71%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 2095 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 2154 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 2155 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 2213 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 2214 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 2273 Query 248 TATTGAAGACTAACTACTGCGAAAGC-GTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | || ||||||| |||||||| || |||| ||||| || ||| ||| |||| Sbjct 2274 GTCTTAACACTAACTTAAGCGAAAGCATTTTGCCAAATATGTTCTCTTTATTCA-AGAAC 2332 Query 307 GAAAGTTA 314 ||||||| Sbjct 2333 AAAAGTTA 2340 >seq2372 Length=4062 Score = 77.0 bits (84), Expect = 6e-12 Identities = 128/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATA-CATTAGCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 3879 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 3938 Query 131 GGAATAATAGAATAGGACGTGCGGTTCT-ATTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 3939 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 3997 Query 189 ATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| || | ||||| | |||||| | |||||||||||||||||| Sbjct 3998 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGA 4055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915076173440