Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq3091 82.4 5e-14 seq2806 78.8 6e-13 seq12926 73.4 2e-11 >seq3091 Length=48052 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct 3358 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGGGTGTACAAAGGGCAGGGACG 3415 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 3416 TAAT-CAATGCGAG 3428 >seq2806 Length=271964 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 224030 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 224087 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 224088 TAAT-CAATGCGAG 224100 >seq12926 Length=5628 Score = 73.4 bits (80), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| | |||||||||||||||||| Sbjct 3053 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGCGTACAAAGGGCAGGGACG 2996 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 2995 TAAT-CAATGCGAG 2983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300761845400