Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3020 154 3e-35 seq10171 150 3e-34 seq3371 150 3e-34 seq3091 150 3e-34 seq3032 105 1e-20 seq10896 102 2e-19 seq2806 87.8 3e-15 seq11795 80.6 5e-13 seq1168 78.8 2e-12 >seq3020 Length=42005 Score = 154 bits (170), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| Sbjct 38838 AGATTGAG-CAATAACAGGTGTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 38780 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 38779 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 38722 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 38721 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 38663 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| ||||||||||||||| |||||||| Sbjct 38662 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGGCCTTTGTA 38620 >seq10171 Length=1662 Score = 150 bits (166), Expect = 3e-34 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||| Sbjct 304 AGATTGAG-CAATAACAGGTCTGTGGTGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 362 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 363 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 420 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 421 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 479 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | | ||||| | | ||| ||||||||||||||| |||||| Sbjct 480 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGTCCTTTG 520 >seq3371 Length=1135500 Score = 150 bits (166), Expect = 3e-34 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||| Sbjct 157074 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCACTAC 157132 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| ||| |||||| |||||| | | || | Sbjct 157133 AATGAAAGTATCAACGTGT--ATTTCCTATACCGAAAGGTCCGGGTAAACCGCTGAACCA 157190 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 157191 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 157249 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 | | ||||| | | ||| ||||||||||||||| |||||| Sbjct 157250 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGTCCTTTG 157290 Score = 102 bits (112), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||| |||||||||| ||| || ||||||||||||| Sbjct 94200 AGATTGAG-CAATAACAGGTCTGTGATGTCCTTAGATGTCCTGAGCTGCACGCGCGCTAC 94142 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | | | Sbjct 94141 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAGCCA 94084 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || || |||| ||||| | | | || || | || | | | ||| ||||| || ||||| Sbjct 94083 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAA 94026 Score = 93.3 bits (102), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||| ||||||||||| |||||||||| ||| || ||||||||||||| Sbjct 28629 AGATTGAG-CAATAACGGGTCTGTGATGTCCTTAGATGTCCTGAGCTGCACGCGCGCTAC 28571 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | | | Sbjct 28570 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAGCCA 28513 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || || |||| | ||| | | | || || | || | | | ||| ||||| || ||||| Sbjct 28512 CTTTCATGCTTGTGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAA 28455 >seq3091 Length=48052 Score = 150 bits (166), Expect = 3e-34 Identities = 170/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||| Sbjct 3616 AGATTGAG-CAATAACAG-TCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 3559 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 3558 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 3501 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || ||||| Sbjct 3500 CTTTCATGCTTGGGATTGTGAAATGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAC 3442 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 3441 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 3399 >seq3032 Length=44882 Score = 105 bits (116), Expect = 1e-20 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||||||| Sbjct 44696 AGATTGAG-CAATAACAGGTCTGTGATGTCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 44638 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | | | Sbjct 44637 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAGCCGCTGAGCCA 44580 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || || |||| ||||| | | | || || | || | | | ||| ||||| || ||||| Sbjct 44579 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAA 44522 >seq10896 Length=1288 Score = 102 bits (112), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||| |||||||||| |||||| ||| ||||||||| Sbjct 182 AGATTGAG-CAATAACAGGTCTGTGATGTCCTTAGATGTCCTGGGCTGCATGCGCGCTAC 240 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || || | ||| ||||| |||||| | | || | Sbjct 241 AATGAAAGTATCAACGTGT--ATTTTCTAGACCGAGAGGTCCGGGTAAGCCGCTGAACCA 298 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 || || |||| ||||| | | | || || | || | | | ||| ||||| || ||||| Sbjct 299 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAA 356 >seq2806 Length=271964 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||| |||||| |||||| ||||||||||||| Sbjct 224249 AGATTGAG-CAATAACAGGTCTGTGATGCCCTCAGATGTCCTGGGCTGCACGCGCGCTAC 224191 Query 166 ACTGA 170 | ||| Sbjct 224190 AATGA 224186 >seq11795 Length=1990 Score = 80.6 bits (88), Expect = 5e-13 Identities = 79/100 (79%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||| |||||||||||||||||||| || ||| ||||||||| |||| ||| || Sbjct 1199 GCAATAACAGATCTGTGATGCCCTTAGATGTCCT-GGCTGCACGCGCGTTACATTGAAAG 1141 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 ||||| || || ||| | ||| |||| |||||| Sbjct 1140 TATCAACGTGT--ATTTCCTAGACCGAGAGGTACGGGTAA 1103 >seq1168 Length=1208 Score = 78.8 bits (86), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 |||||||||||||| ||| || || || || || ||| | ||| ||||| ||||| Sbjct 5 GCACGCGCGCTACAATGAAAGTAGCACCGTGT--ATTTCCTAGACCGAGAGGTCCGGGTA 62 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | | | || | || || |||| ||||| | | | || || | || | | | ||| || Sbjct 63 AACCGCTGAACCACTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGG 121 Query 273 AATGCCTA-GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||| || | ||||| | | ||||| | | | | |||||||||||||||||||| || Sbjct 122 AATTCCCATGTAAGTGTGAGTCATTAACTCACATTGATTACGTCCCTGCCCTTAGT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947071843840