Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3134 410 1e-109 seq466 403 1e-107 >seq3134 Length=2474545 Score = 410 bits (454), Expect = 1e-109 Identities = 600/842 (71%), Gaps = 11/842 (1%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| |||||||| || ||| |||| || || ||| ||||| Sbjct 573367 AGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGACT 573426 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 ||| || || | | || | ||||||||| |||||| |||| || ||||||| Sbjct 573427 GGGCACGCCTAACAGACAACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTTTGCCG 573486 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || || || || |||||| | | || ||||| ||||| || || | Sbjct 573487 CCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCAGATTA 573546 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | ||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||| Sbjct 573547 CAGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGAAATGT 573606 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 |||| || || || || || || || | || | | | ||||| | || |||| Sbjct 573607 ACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTATCTATTTAATG 573666 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || || || || ||||| || |||||||| || || ||||| | |||||| || Sbjct 573667 CAATTGAAACAATGCCGGCAGTTAAGCGGAAGGCCGACTGGGCGCTTTCTTGGATATCCT 573726 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 || | |||| ||||| || || | | |||||||| | || ||||| | || | Sbjct 573727 CTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCT 573786 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | || || ||||| | ||||||||| ||||||| ||||| ||||||||||| || | Sbjct 573787 TTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCA 573846 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 | ||| || || |||| || ||||||||||| ||||||| || |||||||| || Sbjct 573847 CTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGACTTTGCTGTCCTGA 573906 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGT-CGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 | ||| | | || ||||| | ||||| | | || ||||| | |||||| | Sbjct 573907 TGTTCCAGC---ATTTGGTGCAGCGTCCCTGCAGA-GAGCGCATCATTGAGATCATCTCC 573962 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || || || |||||||| ||||| |||||||| |||| ||| | |||||| Sbjct 573963 GATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGC 574022 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA- 61823 |||||||| | ||| ||||| | |||||||| ||||| ||||| |||||| |||| || Sbjct 574023 ATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGAA 574082 Query 61824 -TTTGGGTATG-AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 || |||| | || | | || || || || || || ||| |||||||| |||||| Sbjct 574083 CTTGGGGTCGGCAAAC---TGTACAACACAAAGAATCCGTTTACATTCATGGAAATGATT 574139 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGT 61941 ||| |||| ||||| || ||||| || |||||| || ||||| ||||| || |||| Sbjct 574140 TCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCGAATGGGC 574199 Query 61942 GT 61943 || Sbjct 574200 GT 574201 >seq466 Length=100518 Score = 403 bits (446), Expect = 1e-107 Identities = 1178/1801 (65%), Gaps = 49/1801 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || || || || || ||||| ||||| | || || | |||||| |||||||| || Sbjct 43089 TCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTT 43030 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || ||||| || ||| | ||| || || || |||| ||||||| |||| || ||||| Sbjct 43029 TTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCA 42970 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCA-CGATCTGCAGCCAT 65256 || ||||| ||||| || || ||||| ||||| || |||| || | ||| || ||||| Sbjct 42969 GCAACATGAATATTAAAAGATTGACTTTGATCAATA-AACGCCCCTCTATCAGCTGCCAT 42911 Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | ||| | ||||||||||||| ||||| ||||||| || | || Sbjct 42910 TTTAATAGTT-GACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTT 42852 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 || || || || | || | || || || | ||| ||||| |||| |||| Sbjct 42851 CGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCT 42792 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||||||| | | || | | || | | || ||| |||| | ||||| | Sbjct 42791 CATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACAACTTGAA 42732 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 |||| ||||||| ||| || | ||| ||||| || ||| ||| || || || ||| Sbjct 42731 ACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCAT 42672 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 ||||||| | ||||| ||||| ||||| || ||||||||||| | | ||| ||||||| Sbjct 42671 TGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTC 42612 Query 65556 GCAATCCGTTCATTTCAATGT---TGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | |||| | || ||| | | | | | ||||||| ||| | | | | | Sbjct 42611 TAACACCGTGCTGTTTTATGGACCTTTTAAGA---TGATCCCAGTCCCAAA--GATCTGT 42557 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | || | | ||||||||| | || | ||| | || | || || | Sbjct 42556 TGGTGATCT----GTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAA 42501 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732 | | || ||| || |||| ||||| | || ||| || | || | || || Sbjct 42500 TATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCAT 42441 Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792 | ||||| || || || || || |||| | | ||| || ||||| || ||||| | Sbjct 42440 AGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAA 42381 Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852 | |||||| | || | || || | ||||| || |||||||| || || || || | Sbjct 42380 ACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCC 42321 Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912 | ||||| || | | ||||| || | || || || || ||||| || || ||||| Sbjct 42320 GTAAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCA 42261 Query 65913 AATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTAGG 65970 || || || | | | ||| || || || || ||| || || ||| Sbjct 42260 GGTTTTTGGTAACAATTTTA--GTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTT-- 42205 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 |||| || ||||||| || ||||| | ||||| | || || || Sbjct 42204 ----TCGGCCGT---------CACAAACATGTTTAGGGCTATTGATGCTAAATTACATAC 42158 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 |||||| ||||| || || | |||||| |||||||| ||||| | ||||||||| ||| Sbjct 42157 AGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTAT 42098 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 || || | ||| |||||||| || || | || || | || || | | |||||| || Sbjct 42097 AGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGG 42038 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 || || ||||| ||||| || ||||| ||||| |||||||| | ||||| || | Sbjct 42037 GGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAAT 41978 Query 66211 ACG----TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || | ||||| | ||| || || | | || | | ||| || ||||| Sbjct 41977 TCGATTCTGTCGCCCCTCTTTT----TCATATTTGACATACAATTTTTCAAATTCTTCAC 41922 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 |||| || || ||||| || || |||||||||||||||| ||||||||| | | Sbjct 41921 CCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGG 41862 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| || || |||||| |||||||| ||||| | ||| || || ||||| || || | Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 | || ||||| | || |||||| | ||| | || ||||| | ||| | ||||| Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || |||||||| || ||||| | || | ||| || ||||| || ||||| |||| Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 | || |||||||| || || | | ||| ||||| | || || || | ||||| |||| Sbjct 41681 GTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGC 41622 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 || || | || || ||| || ||| |||||||| |||||||| || || |||| Sbjct 41621 CGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCCTCCTGCCG 41562 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 || ||||| || || | | ||||| ||||| || ||||| || | || Sbjct 41561 ATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAGAAT--CCGA 41504 Query 66687 TG--ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAG 66744 || || || | || | ||||| | |||||| | |||||| || | || || Sbjct 41503 TGCCATTGTTAAAAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAGCAGCAAAAAG 41444 Query 66745 GGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGC 66804 || |||| || || ||||| ||| | || | |||| || || || || ||| Sbjct 41443 CGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTTCAATCGCAGA 41384 Query 66805 ATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTT 66863 |||||| | || ||||| || || | ||| ||| ||||| || | || || || |||| Sbjct 41383 ATCAATATCATCACCATGTATACCAATTGCGACA-CGCATTAGCATGTGCTGTGGTCGTT 41325 Query 66864 C 66864 | Sbjct 41324 C 41324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397502442279200