Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 410 1e-109
seq466 403 1e-107
>seq3134
Length=2474545
Score = 410 bits (454), Expect = 1e-109
Identities = 600/842 (71%), Gaps = 11/842 (1%)
Strand=Plus/Plus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| || || || |||||||| |||||||| || ||| |||| || || ||| |||||
Sbjct 573367 AGGCCGAGGCATCATTCTGGACTGTGGAGGAAGTGGATCTGTCTAAGGATCTGACTGACT 573426
Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225
||| || || | | || | ||||||||| |||||| |||| || |||||||
Sbjct 573427 GGGCACGCCTAACAGACAACGAGCGTCATTTCATTTCACATGTTCTGGCCTTTTTTGCCG 573486
Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285
| || || || || || || |||||| | | || ||||| ||||| || || |
Sbjct 573487 CCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGTTTTAGCCAGGAAGTTCAGATTA 573546
Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345
| ||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 573547 CAGAGGCTCGTTGCTTCTATGGCTTTCAGATAGCCATGGAGAATGTCCACTCGGAAATGT 573606
Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405
|||| || || || || || || || | || | | | ||||| | || ||||
Sbjct 573607 ACAGCGTCCTGATTGACACATATATACGCGATCCGCATCAGCGTGATTATCTATTTAATG 573666
Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465
| || || || || ||||| || |||||||| || || ||||| | |||||| ||
Sbjct 573667 CAATTGAAACAATGCCGGCAGTTAAGCGGAAGGCCGACTGGGCGCTTTCTTGGATATCCT 573726
Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525
|| | |||| ||||| || || | | |||||||| | || ||||| | || |
Sbjct 573727 CTAAGGCAGCTAACTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCT 573786
Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585
| || || ||||| | ||||||||| ||||||| ||||| ||||||||||| || |
Sbjct 573787 TTAGCGGCAGCTTTGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCA 573846
Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645
| ||| || || |||| || ||||||||||| ||||||| || |||||||| ||
Sbjct 573847 CTTTCTCGAACGAACTGATCTCCCGCGACGAGGGACTGCATTGCGACTTTGCTGTCCTGA 573906
Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGT-CGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704
| ||| | | || ||||| | ||||| | | || ||||| | |||||| |
Sbjct 573907 TGTTCCAGC---ATTTGGTGCAGCGTCCCTGCAGA-GAGCGCATCATTGAGATCATCTCC 573962
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| || || || || |||||||| ||||| |||||||| |||| ||| | ||||||
Sbjct 573963 GATGCTGTTACCATTGAACAGGAGTTTCTTACTGACGCACTGCCGGTCAATTTGATCGGC 574022
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA- 61823
|||||||| | ||| ||||| | |||||||| ||||| ||||| |||||| |||| ||
Sbjct 574023 ATGAATTGCGCACTTATGTCCGAATATATTGAGTTTGTGGCCGATCGTCTGCTGGTTGAA 574082
Query 61824 -TTTGGGTATG-AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
|| |||| | || | | || || || || || || ||| |||||||| ||||||
Sbjct 574083 CTTGGGGTCGGCAAAC---TGTACAACACAAAGAATCCGTTTACATTCATGGAAATGATT 574139
Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGT 61941
||| |||| ||||| || ||||| || |||||| || ||||| ||||| || ||||
Sbjct 574140 TCGTTGGACGGCAAAACCAATTTCTTTGAGAAAAAAGTGGGCGAATATCAGCGAATGGGC 574199
Query 61942 GT 61943
||
Sbjct 574200 GT 574201
>seq466
Length=100518
Score = 403 bits (446), Expect = 1e-107
Identities = 1178/1801 (65%), Gaps = 49/1801 (3%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || || || || || ||||| ||||| | || || | |||||| |||||||| ||
Sbjct 43089 TCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCTGTT 43030
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| ||||| || ||| | ||| || || || |||| ||||||| |||| || |||||
Sbjct 43029 TTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATTTTCCATAGTTTGGCTCA 42970
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCA-CGATCTGCAGCCAT 65256
|| ||||| ||||| || || ||||| ||||| || |||| || | ||| || |||||
Sbjct 42969 GCAACATGAATATTAAAAGATTGACTTTGATCAATA-AACGCCCCTCTATCAGCTGCCAT 42911
Query 65257 GTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
| ||| | ||| | ||||||||||||| ||||| ||||||| || | ||
Sbjct 42910 TTTAATAGTT-GACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGGATTTCTT 42852
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
|| || || || | || | || || || | ||| ||||| |||| ||||
Sbjct 42851 CGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTTTTCATCT 42792
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||||||| | | || | | || | | || ||| |||| | ||||| |
Sbjct 42791 CATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACAACTTGAA 42732
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
|||| ||||||| ||| || | ||| ||||| || ||| ||| || || || |||
Sbjct 42731 ACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAACGACTCAT 42672
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
||||||| | ||||| ||||| ||||| || ||||||||||| | | ||| |||||||
Sbjct 42671 TGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAAGAGTTTC 42612
Query 65556 GCAATCCGTTCATTTCAATGT---TGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612
| |||| | || ||| | | | | | ||||||| ||| | | | | |
Sbjct 42611 TAACACCGTGCTGTTTTATGGACCTTTTAAGA---TGATCCCAGTCCCAAA--GATCTGT 42557
Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672
| || | | ||||||||| | || | ||| | || | || || |
Sbjct 42556 TGGTGATCT----GTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACTTCCAA 42501
Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAA 65732
| | || ||| || |||| ||||| | || ||| || | || | || ||
Sbjct 42500 TATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAAAGCTCCAT 42441
Query 65733 AATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCA 65792
| ||||| || || || || || |||| | | ||| || ||||| || ||||| |
Sbjct 42440 AGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTCATACGGAA 42381
Query 65793 TACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGAC 65852
| |||||| | || | || || | ||||| || |||||||| || || || || |
Sbjct 42380 ACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGGGCGGTGCC 42321
Query 65853 GCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCA 65912
| ||||| || | | ||||| || | || || || || ||||| || || |||||
Sbjct 42320 GTAAATTTGATTTTTTTGCCTCTGGCAAGGGATAATAGTTTATATCAATTATTTTATTCA 42261
Query 65913 AATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTTTAGG 65970
|| || || | | | ||| || || || || ||| || || |||
Sbjct 42260 GGTTTTTGGTAACAATTTTA--GTTACATCTTTCAGTTTTTTGAAGTCGTAAGATTTT-- 42205
Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030
|||| || ||||||| || ||||| | ||||| | || || ||
Sbjct 42204 ----TCGGCCGT---------CACAAACATGTTTAGGGCTATTGATGCTAAATTACATAC 42158
Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090
|||||| ||||| || || | |||||| |||||||| ||||| | ||||||||| |||
Sbjct 42157 AGCTATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTAT 42098
Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150
|| || | ||| |||||||| || || | || || | || || | | |||||| ||
Sbjct 42097 AGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAAAGCATGTAAGG 42038
Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210
|| || ||||| ||||| || ||||| ||||| |||||||| | ||||| || |
Sbjct 42037 GGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGAGCCTTAACAAT 41978
Query 66211 ACG----TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266
|| | ||||| | ||| || || | | || | | ||| || |||||
Sbjct 41977 TCGATTCTGTCGCCCCTCTTTT----TCATATTTGACATACAATTTTTCAAATTCTTCAC 41922
Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326
|||| || || ||||| || || |||||||||||||||| ||||||||| | |
Sbjct 41921 CCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGG 41862
Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386
||| || || |||||| |||||||| ||||| | ||| || || ||||| || || |
Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802
Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446
| || ||||| | || |||||| | ||| | || ||||| | ||| | |||||
Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742
Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506
| || |||||||| || ||||| | || | ||| || ||||| || ||||| ||||
Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682
Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566
| || |||||||| || || | | ||| ||||| | || || || | ||||| ||||
Sbjct 41681 GTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGC 41622
Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626
|| || | || || ||| || ||| |||||||| |||||||| || || ||||
Sbjct 41621 CGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCCTCCTGCCG 41562
Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686
|| ||||| || || | | ||||| ||||| || ||||| || | ||
Sbjct 41561 ATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATAGAAT--CCGA 41504
Query 66687 TG--ATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAG 66744
|| || || | || | ||||| | |||||| | |||||| || | || ||
Sbjct 41503 TGCCATTGTTAAAAGAAAACATGATGATAATTGGGGACGGTTTGTGGCAGCAGCAAAAAG 41444
Query 66745 GGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGC 66804
|| |||| || || ||||| ||| | || | |||| || || || || |||
Sbjct 41443 CGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTTTCAATCGCAGA 41384
Query 66805 ATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTT 66863
|||||| | || ||||| || || | ||| ||| ||||| || | || || || ||||
Sbjct 41383 ATCAATATCATCACCATGTATACCAATTGCGACA-CGCATTAGCATGTGCTGTGGTCGTT 41325
Query 66864 C 66864
|
Sbjct 41324 C 41324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397502442279200
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