Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq61 558 3e-154 seq104 423 2e-113 >seq61 Length=22324452 Score = 558 bits (618), Expect = 3e-154 Identities = 1247/1854 (67%), Gaps = 41/1854 (2%) Strand=Plus/Plus Query 65081 ACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTG 65140 || |||||||| || ||||| ||||| | ||| || | ||||||||||| ||||| ||| Sbjct 13004072 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTTTG 13004131 Query 65141 AGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCC 65200 || ||||| ||| | ||||| || || || | | |||| | || || ||||| ||| Sbjct 13004132 AGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGGCTCTGCC 13004191 Query 65201 ACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCA 65260 ||||| || || || |||||||||||||| ||| | ||||||||| || ||||| | | Sbjct 13004192 ACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGCCATTTTA 13004251 Query 65261 ATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGG 65319 || | ||| | | || || ||||| || |||||||| || || |||| || Sbjct 13004252 ATCGTG-GACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTTCTGGGG 13004310 Query 65320 AATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTC 65379 || |||| |||| |||| ||| || || | | || || | || ||| || Sbjct 13004311 GATGGCCTCGATGTTTTGGATTGAGCCCCGGCTGGATATGATCTGGTTCTTCATGTCGTC 13004370 Query 65380 TGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTC 65439 |||||| ||| ||| | || | | | ||| ||| | |||| || || || || Sbjct 13004371 GTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCTGAAATTC 13004430 Query 65440 GCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTT 65499 ||||||||| || || | | || ||||| | || ||| || ||||||||| |||| Sbjct 13004431 GCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATTCATTGTT 13004490 Query 65500 GCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAA 65559 ||| | ||| || || || || ||||| ||||| ||||| |||| || ||||| || | Sbjct 13004491 GCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGTTCCGGAC 13004550 Query 65560 TCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGAC 65619 |||| | | ||| | || || | ||||| ||| | |||| ||| | Sbjct 13004551 GCCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAGA--GGTT---CGTTGGG 13004605 Query 65620 ATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACT 65679 | || | |||||| || | |||| |||| | || |||| || | | | Sbjct 13004606 A-CCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCGTAGGT 13004664 Query 65680 ATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAAT 65739 ||||| ||||| ||| ||| |||| |||||||| || | ||| || | ||||| Sbjct 13004665 TTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTAAAT 13004724 Query 65740 GGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCAT 65799 ||| |||||||| | |||| | || || || || ||||| || || | | ||| Sbjct 13004725 GGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCACTCTCATATGGGAATCGCAT 13004784 Query 65800 CAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATT 65859 |||| | | ||| || | || ||||| ||||| || | |||||| || | |||||| Sbjct 13004785 GAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCTCAAATT 13004844 Query 65860 GGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGC 65918 ||| | ||| ||||| || | || || || |||||||| ||||| || | ||| Sbjct 13004845 GGA-CTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAGATTTT 13004903 Query 65919 GTGTCACCA-CATGCACGATACGTCGCAATTG-TTC--GAAATCAAAATGTTTAGGACGA 65974 ||| || | | || | || || | | | ||| ||||||| | || Sbjct 13004904 TTGTAACTATCTTG---GTGACTTC-CTTTAGCTTCTTGAAATCATACGTCTTC------ 13004953 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 || || ||| |||||| || ||||| | ||||| ||||||||||| ||| Sbjct 13004954 TCCGGTGTG---------ACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCT 13005004 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 ||||| || || |||| || || || ||||| ||||||| || ||||| |||||| Sbjct 13005005 ATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTG 13005064 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || | |||||| ||||| ||||| | ||||| || |||||| | | |||||||||| | Sbjct 13005065 CCAACATTCTGCTGATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTT 13005124 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT 66214 || || || ||||| | |||||||||||| ||| || | | ||||| ||||| || Sbjct 13005125 CCAGTTTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGG 13005184 Query 66215 ACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACT 66274 || | ||| | | ||||| | || || || | |||||| || ||||| || Sbjct 13005185 TTGGCACGACCCTCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACA 13005244 Query 66275 TCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACA 66334 || || | || || ||||| || ||||| ||||||||||| |||| || || || Sbjct 13005245 TCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCAT--TGGCCTCCA 13005302 Query 66335 CGACG---CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 || || ||| || ||||| |||||||| |||||||| ||||||||||| || || | | Sbjct 13005303 CG-CGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTC 13005361 Query 66392 TCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 || || |||| ||| ||||| || || ||||||||||||| || | ||||| || Sbjct 13005362 TCTTCCTTGCCAGTG-TTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGG 13005420 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 ||||||||| ||||| || | || ||| |||||||| || || || || || || || Sbjct 13005421 TTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGC 13005480 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTC 66570 |||||||||||||| | || ||| || || | ||| || || | || || ||||| Sbjct 13005481 CACATTGTTGAAGACCCTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACA 13005540 Query 66571 GATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 |||| || || ||| || || || || || || || || ||||| || | ||| Sbjct 13005541 AATGGAGGTGCCCTTTGCACGAATGCAATGCACGTTGAGGCCGATGCCACCAGCAGACTT 13005600 Query 66631 CGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGAT 66690 ||||| ||| || | |||| | | ||||||||| || |||||||| | | || Sbjct 13005601 GGAGATCATAGCGCACTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCAT 13005660 Query 66691 GGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGG 66750 |||||| ||| | || || || || || | |||||| || | || || ||||| Sbjct 13005661 GGTCAGCAGGAAACACGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGG 13005720 Query 66751 TGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAAT 66810 | || ||||| ||||| | || | | |||||| || || | | | |||||||| Sbjct 13005721 CGATGCATGCGTGAAGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAAT 13005780 Query 66811 GTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAG 66870 || || ||||| || |||| || |||||||| | || || || || ||| | | Sbjct 13005781 GTCCTCTCCATGGATTCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGAT 13005840 Query 66871 CCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | || | | | | |||||||| ||||||||||| | ||||| || Sbjct 13005841 CTTTCCGTTTCTCTTGAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATA 13005894 >seq104 Length=21139217 Score = 423 bits (468), Expect = 2e-113 Identities = 597/838 (71%), Gaps = 3/838 (0%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| || || || |||||||| || |||||||| ||||||||||| ||| | | ||||| Sbjct 9083156 AGGCTGAGGCCTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACT 9083215 Query 61166 GGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCG 61225 || | || | | || || | |||||||| || ||| |||| ||||| |||| Sbjct 9083216 GGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCG 9083275 Query 61226 CTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 | || || || ||||| || |||||| | ||||||| ||| ||||||||||| | Sbjct 9083276 CCTCCGATGGCATCGTAAACGAGAATCTGGTGGAACGCTTCAGTCAGGAGGTGCAGATCA 9083335 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | ||||| || || ||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 9083336 CAGAGGCACGCTGCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAGATGT 9083395 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 ||||||| || ||||| || |||||| |||| | | | || || ||||||| | Sbjct 9083396 ACAGTGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACCTGTTCAACG 9083455 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || || ||||| ||||| |||||||| || || || |||||| | ||||| || Sbjct 9083456 CTATTGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTTTCCTGGATTTCCT 9083515 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 || |||| | ||||| || || | | || ||||| | || ||||| | |||| Sbjct 9083516 CTAAGTCGGCCAATTTTGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTTT 9083575 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 |||| || || ||| | || || ||| | ||||| || || |||||||| || |||| Sbjct 9083576 TCAGCGGCAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTTATGCCTGGACTGA 9083635 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 ||||| ||| ||| | || || |||||||||||| |||| || || ||||| || || Sbjct 9083636 CCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGA 9083695 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | ||| | | | |||||| | || || | ||||| | ||||| | || | Sbjct 9083696 TGTTCCAGC---ACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCG 9083752 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | || || | || || |||||||| || || || || |||| || | ||||||| Sbjct 9083753 ACGCAGTGGCGATTGAGCAGGAATTCCTCACCGATGCCCTGCCTGTTAATTTAATCGGCA 9083812 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATT 61825 ||||||||| || ||||| ||||| || || || || || || ||| || | || || | Sbjct 9083813 TGAATTGTGACCTGATGTCCCAGTACATAGAGTTCGTGGCGGATCGTTTGCTTGTGGAGT 9083872 Query 61826 TGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGC 61885 |||| | | |||||| || || || ||||| || | |||||||| ||||| |||| Sbjct 9083873 TGGGCGTTGGGAAGATCTACAACACCAAGAACCCCTTCAACTTCATGGAGATGATATCGC 9083932 Query 61886 TGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||||||| ||||| || ||||| |||||| || || || || || || |||| || Sbjct 9083933 TGGATGGAAAGACCAACTTTTTTGAGAAAAAGGTGGGAGAGTACCAGCGCATGGGAGT 9083990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397528641140720