Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_032919.1 Length=5859 Score E Sequences producing significant alignments: (Bits) Value seq104 122 3e-24 >seq104 Length=21139217 Score = 122 bits (134), Expect = 3e-24 Identities = 495/765 (65%), Gaps = 20/765 (3%) Strand=Plus/Plus Query 4207 TTGCCCTAAAGGAAGAAAGCCAGAAAACAAGGGAAATAATCACCACTCCCATAGCCAGCT 4266 |||| || ||||| || | |||||| || |||| ||||| || || || | || | Sbjct 2554782 TTGCACTCAAGGAGGAGACCCAGAAGACGCGGGAGATAATAACAACACCGCTCCATAGTT 2554841 Query 4267 ACCTGCGCCAGACATATCTGATGTACCTCCTAGGCAAGGCACCAATTCCTTCTCCGATAT 4326 || | || || ||||||||| | |||| || || |||| || ||||| || || |||| Sbjct 2554842 ACGTCCGACAAACATATCTGCTATACCGCCGTGGAAAGGTTCCCATTCCATCCCCAATAT 2554901 Query 4327 CTAGCCCGGCGTGGCTACCTTCTTTCGA-GGAGGGGAACTATTCTTGGTATGGCTGTATC 4385 | ||||| |||||| || | || || ||| || | || |||||||| || || Sbjct 2554902 CCAGCCCAAAGTGGCTTCCCACGTTTGAAGGAAAGGCA-TACAACTGGTATGGTTGCGTC 2554960 Query 4386 GACGGAGAGCGCTTTGACCACACTGTCCCAAAAGAAGCAATTATATGTCTCCTAGATGAG 4445 ||||| || || ||||||||| | || |||||||| || || || || | | ||| Sbjct 2554961 GACGGCGAACGTTTTGACCACTCGGTTCCAAAAGACGCGATCATCGAGCTGATT-AGGAG 2555019 Query 4446 -CTTGG-GACTATATCGCCAGAGGCTCGGAAGGTAGCTGATGAAGAAATCAAGCACATCC 4503 || || ||| | || | || | | || || |||| ||||| | ||| || Sbjct 2555020 ACTAGGCGACCTTGACGAC-GAAACGAGAGCAGTCGCCGATGCTGAAATAGAACACCTCA 2555078 Query 4504 AAAATCTAAAAATAGAATGGTCTGGCCGTGTTTGGAAGTATGAAGGGGGAC-TGTTGTCC 4562 | || |||| ||| || ||| | | ||||| | || ||| | | | |||| Sbjct 2555079 ACAAGCTAACAATCGAGTGGGGAGAGCACACGTGGAAATG-GATGGGCGGCATAATGTCT 2555137 Query 4563 GGCTGGCGCTTCACATCCGTTTTGGGGTCTATAATCTCTCTCAGTGCTGCAGAGTATGTT 4622 || |||||| | ||||| | || || | || ||| || || ||| | || | Sbjct 2555138 GGATGGCGCATAACATCACT----GGTTCACTGGTCAGTCTGAGCGCGGCAAATTACATA 2555193 Query 4623 GTGACAAAGACAAACACCAAAGGAGCGGTCCAGTATGGAGTAATGGGTGATGATGTTGTA 4682 || || |||||||| || || || || |||||| ||||| || || | || Sbjct 2555194 CTGGAGAAAACAAACACTTCGGGCGCAGTGGAGATTGGAGTCATGGGAGACGACATAGT- 2555252 Query 4683 TTCTATAGTAACGTCGCTTCCA--TACCTCCTGAGGACATGGTAAAATATTACAACGAA- 4739 |||| | | | | ||| |||| ||||| |||||| | ||| |||| Sbjct 2555253 -TCTAGCTTCAAATACCATCCGCCTACCAGCTGAGACAATGGTAGAGCTCTAC--CGAAG 2555309 Query 4740 -TTTGGGCTCCGCGCCAATATACACAAAACATCGTCGGGCGAGCAGGGGGAGTTCTTGAG 4798 ||||||||| ||||| | | ||||| || ||| || || || || | || Sbjct 2555310 TTTTGGGCTCAAGGCCAACCTTGATAAAACGGTTTCTGGCTCCCAAGGCGAATTTGTTAG 2555369 Query 4799 AAAAGTCCGGTCCAAAGGAGGGTCGTGGGCATTTCCAGCGCTCGATCTTAAAACCATCAC 4858 || || || ||| | || || || ||||||||| || |||| ||| | |||||| | || Sbjct 2555370 GAAGGTGCGTTCCCACGGGGGATCATGGGCATTTTCATCGCTAGATTTAAAAACCCTAAC 2555429 Query 4859 ACATGCAGCGCCCTGGATAACAAGTTTTCAATTTGTCCAGGAAGAGGAATGCGCAACTGC 4918 || || || || ||| | ||| | | | || | ||| |||||||||||||| | Sbjct 2555430 GCACGCTGCCCCTTGGGTCACACACTATTAGTTCGCAATGGACGAGGAATGCGCAACATC 2555489 Query 4919 CTGGCACACTCTCACCAGTCGATTGCTCCCACATGCCACGGACCC 4963 |||||||| || || || ||||| || || || || ||||| Sbjct 2555490 TTGGCACACACTACTAAGCCGTTTGCTGCCTCACGCGACTGACCC 2555534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18635144207680