Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1109 376 4e-102 seq473 201 2e-49 seq295 201 2e-49 seq758 154 2e-35 >seq1109 Length=1103 Score = 376 bits (416), Expect = 4e-102 Identities = 232/244 (95%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 175 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 232 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 233 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTTCGAAGATT 292 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| Sbjct 293 ACCCGGGCCTGTCGACCCAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 352 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 353 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTCGGCCTAAAC 412 Query 240 GGCC 243 |||| Sbjct 413 GGCC 416 >seq473 Length=32739 Score = 201 bits (222), Expect = 2e-49 Identities = 204/256 (80%), Gaps = 11/256 (4%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| |||||| |||||| |||||||||||||||| |||||| ||| Sbjct 29685 ACAAAGGGCAGGGACGTAATCAACGTGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCT 29742 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTAC 121 |||| | | || ||||| || | ||||| | ||||| | | |||| | |||| Sbjct 29743 CGTTCATGGGGAATAATTGGAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTTAC 29802 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 |||| ||| ||||||| || | || || ||| | | ||||||||||||||||||||| Sbjct 29803 CCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCGGC 29859 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAAAG 240 ||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| ||| Sbjct 29860 CCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGAAG 29916 Query 241 GC-CATCTCCCTCGAA 255 | | | |||||| || Sbjct 29917 CCGCTTGTCCCTCTAA 29932 >seq295 Length=121342 Score = 201 bits (222), Expect = 2e-49 Identities = 206/258 (80%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 120928 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 120871 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | | | ||| | ||||| | | |||| | || Sbjct 120870 CTCGTTCATGGGAAATAATTGCAA-GCCCCAACCCTAGCACGAAGGAGGTTCAGCGGGTT 120812 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || |||||| | | ||||||||||||||||||| Sbjct 120811 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGTTGATTCCTTCAGTGTAGCGCGCGTGCG 120755 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||||||||||| |||||||||||| |||||| ||||| || |||| | ||| | Sbjct 120754 GCCCAGAACATCTAAGAGCATCACAGACCAATTATTG-CTCAATCT--CGTGCGGCTAGA 120698 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 120697 AGCCGCTTGTCCCTCTAA 120680 Score = 123 bits (136), Expect = 4e-26 Identities = 184/259 (71%), Gaps = 44/259 (17%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||| | Sbjct 68172 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCACTTACTGGGAATTAC 68230 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCAT--CACGATGAAATTTCAAAGAT 118 ||||| | | || |||||||| | ||||| || ||||| | | |||| Sbjct 68231 -TCGTTCATGGGGAATAATTGCAAGCCCCAATCCCGATAGCACGAAGGAGGTTCAG---- 68285 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || || ||||||||||||||||| Sbjct 68286 ---------CTG--------------AGATTCCTT--------CAGTGTAGCGCGCGTGC 68314 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 ||||||||| |||||||||||||||||||||||||||| ||||| || |||| | ||| Sbjct 68315 GGCCCAGAATATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAG 68371 Query 238 AAGGC-CATCTCCCTCGAA 255 ||| | | | |||||| || Sbjct 68372 AAGCCGCTTGTCCCTCTAA 68390 >seq758 Length=6947 Score = 154 bits (170), Expect = 2e-35 Identities = 179/229 (78%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||||| | Sbjct 3522 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAATT-C 3465 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGAT 118 | ||| | | |||| || || | | ||||| | || || || | |||| | | Sbjct 3464 CAAGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 3408 Query 119 T-ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 | |||||||||| |||| | ||| ||| || ||||| ||| | || |||||||||||| Sbjct 3407 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCATTGTAGCGCGCGT 3351 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 3350 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751969563270