Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1109 210 4e-52 seq295 163 5e-38 seq758 132 9e-29 seq473 120 6e-25 seq355 120 6e-25 >seq1109 Length=1103 Score = 210 bits (232), Expect = 4e-52 Identities = 196/245 (80%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 1067 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATAGCTCTGTATACATTAGCATGGG 1008 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||| | || | ||||| || || | ||| || ||||||||||| Sbjct 1007 ATAACGTCACAGGATTT-CGATCCTATTGCGTCGGCCTTCGGGATCGGAGTAATGATTAA 949 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 948 GAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 889 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 888 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCA-AGAACGAAAGTT 830 Query 314 AGGGG 318 |||| Sbjct 829 GGGGG 825 >seq295 Length=121342 Score = 163 bits (180), Expect = 5e-38 Identities = 215/292 (74%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| ||||||||||| || Sbjct 119954 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTC 120013 Query 100 AAAGCAGG---CCTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| || |||||| | |||||||||||| |||||||| | |||| Sbjct 120014 AAAGCAGGCTACCTTCGCCTGAATACTGTGTGCATGGAATAATGAAATAGGACCT-CGGT 120072 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAAT--------GATTAATAGGGATAGTCGGG 207 |||||||||||||||| | ||| | ||| | | |||||||||| || ||| Sbjct 120073 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTCTGGGTTAGGTTAATAGGGACAGATGGG 120131 Query 208 GGTGTCAGTATTCAATTGTCAGA-GGTGAAATTCTTGGATTTATTGAAGACTAACTACTG 266 || | ||||| || ||| |||||||||||||||| ||||| || | Sbjct 120132 GGCATTCGTATTGCGACGTTAGAGGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAG 120191 Query 267 CGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| || |||| |||||||||||||||| ||||||||||||| || Sbjct 120192 CGGAAGCATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 120242 >seq758 Length=6947 Score = 132 bits (146), Expect = 9e-29 Identities = 191/261 (73%), Gaps = 9/261 (3%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATA 121 ||| | ||| |||||||||| ||||||||||| | ||||||||| | ||| ||||| Sbjct 2514 GCCGGTACTATTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATA 2573 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC 179 | |||||| ||||| |||| ||| | | ||||| ||| ||||||| || | Sbjct 2574 TTCTGTGCATGGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCA 2632 Query 180 -GCCGTAATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||||||||| ||| ||||| | |||||| | |||||||||| Sbjct 2633 AGAGGTAATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAA 2692 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 |||||||| |||||||||| |||||||| || |||| |||||||||||||| Sbjct 2693 TTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAA 2752 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||||||||| || Sbjct 2753 TCA-AGAACGAAAGTTAGAGG 2772 >seq473 Length=32739 Score = 120 bits (132), Expect = 6e-25 Identities = 196/283 (69%), Gaps = 32/283 (11%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||| ||| ||||||||||| || Sbjct 30624 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTGGAACAAATTAGAGTGCTC 30565 Query 100 AAAGCAGG---CCTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| || |||||| | |||||||||||| ||||||||| Sbjct 30564 AAAGCAGGCTACCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGAC------- 30512 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 ||| || ||||||||||||||||| || | ||| | | Sbjct 30511 -------TGT-----------AC--ATGTAATGATTAATAGGGACAGATGTGGGCATTCG 30472 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | || |||||||||||||||||| ||||| || |||||||| | Sbjct 30471 TATTGCAACGTTTGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAGCAT 30412 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | |||| |||||||||||||||| ||||||||||||| || Sbjct 30411 TTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 30370 >seq355 Length=1373 Score = 120 bits (132), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 5/136 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| |||||||||| || Sbjct 1239 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTACTC 1298 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | |||| Sbjct 1299 AAAGCAGGCTATCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 1357 Query 156 TCTATTTTGTTGGTTT 171 |||||||||||||||| Sbjct 1358 TCTATTTTGTTGGTTT 1373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915161762944