Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq574 140 1e-30 seq572 136 2e-29 seq473 136 2e-29 seq376 134 6e-29 seq295 132 2e-28 seq758 125 3e-26 seq443 111 7e-22 >seq574 Length=4751 Score = 140 bits (154), Expect = 1e-30 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1894 AGAGCGTACATGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 1835 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| ||| |||| ||||| |||||||||||||| || | ||||| Sbjct 1834 GGAAACCCTGATGGAGGTTCGTAGCGATTCTGACGTGCAAATCGATCATCGGAACTGGGT 1775 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1774 ATAGGGGCGA 1765 >seq572 Length=28875 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 25844 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 25903 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 25904 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 25963 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 25964 ATAGGGGCGA 25973 >seq473 Length=32739 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 24965 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 24906 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 24905 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 24846 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 24845 ATAGGGGCGA 24836 Score = 127 bits (140), Expect = 9e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||| | |||| |||| |||||| | | ||||| ||||||| Sbjct 25780 GAGTCGGGTTGCTTGAGAGTGCAACCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 25721 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 25720 ATAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 25661 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 25660 AGAGAGTTCAAGAGTACGTGAAA 25638 >seq376 Length=25404 Score = 134 bits (148), Expect = 6e-29 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||||||||||||||||||||||| ||| |||| ||| |||||| ||| Sbjct 1581 GTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 1640 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 1641 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGTATAGGGGCGA 1699 Score = 122 bits (134), Expect = 4e-25 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||| | |||| |||| |||||| | | ||||| ||||||| Sbjct 750 GAGTCGGGTTGCTTGAGAGTGCAACCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 809 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| || || ||||||| |||||| | Sbjct 810 ATAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGATAGTTGAAAAGAACTTTGAAG 869 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 |||||||| || || | ||||||| || Sbjct 870 AGAGAGTTCAAGAGTAAGTGAAATCGT 896 >seq295 Length=121342 Score = 132 bits (146), Expect = 2e-28 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||||||||||||||||||||||||||||||| ||| |||| ||| |||||| ||| | Sbjct 61933 TTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGGGGAAACCCTGAT 61874 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| ||||| | |||||||||||||||| | ||||||||||||||| Sbjct 61873 GGAGGTCCGTAGCGATTCTGACATGCAAATCGATCGTCATAACTGGGTATAGGGGCGA 61816 Score = 111 bits (122), Expect = 7e-22 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCT--AA 97 |||||| |||| | | || |||| | |||| |||| |||||| | | ||||| ||| || Sbjct 62762 GAGTCGGGTTGCTGGAGAGTGCAACCCTAAGTGGGTGGTAAACTCCATCTAAGGCTCTAA 62703 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 62702 ATATAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGA 62643 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | | |||||| || || |||||||| Sbjct 62642 AGAAAGAGTTCAAGAGTACGTGAAA 62618 >seq758 Length=6947 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 5946 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 6005 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 6006 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 6065 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 6066 TAGGGGCGA 6074 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 5246 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 5305 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 5306 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 5365 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 5366 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 5399 >seq443 Length=7598 Score = 111 bits (122), Expect = 7e-22 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCT--AA 97 |||||| ||| |||||| |||| | |||| |||| |||||| | | ||||| ||| || Sbjct 6939 GAGTCGCGTTACTTGGGAGTGCATCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTCTAA 6998 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| | ||||||||||||| ||||||| |||| ||| | |||||| |||||| Sbjct 6999 ATATAACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAATGTGGAAAAGAACTTTGA 7058 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||||| || || |||||||| Sbjct 7059 AGAGAGAGTTCAAGAGTACGTGAAA 7083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079910381900