Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1109 273 3e-71 seq473 205 1e-50 seq295 194 3e-47 seq758 167 4e-39 seq2612 84.2 3e-14 >seq1109 Length=1103 Score = 273 bits (302), Expect = 3e-71 Identities = 217/260 (83%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 379 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | || | | | |||||||||||||||| || Sbjct 380 CCTGTTATTGCCTCAAACTTCCTCGGCCTAAACGGCCGCAGTCCCTCTAAGAAGCTGCCC 439 Query 122 ACCAACCATAG---TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | | | || | |||| |||||||| | ||||||||||||||| |||||| Sbjct 440 GCGGAGCTGTGCGCTCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 499 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TAACCTGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 559 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| || |||||| Sbjct 560 GAAAGAGCTCTCGGTCTGTC 579 >seq473 Length=32739 Score = 205 bits (226), Expect = 1e-50 Identities = 215/292 (74%), Gaps = 47/292 (16%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29835 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 29894 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| | |||||||||||||| Sbjct 29895 C-TCAATCT-CGTGCGGCTAGAAGCCGCTTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 29952 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | | || ||| ||||| | | ||||| Sbjct 29953 GTAGTAAAAACTCGCCGACCGAAGTCGGGAGCCTTCGAGATACCATAATTTACGTCTATT 30012 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 30013 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 30072 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| |||||||||||||| ||||||| |||| Sbjct 30073 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGGTATCAATATGTC 30124 >seq295 Length=121342 Score = 194 bits (214), Expect = 3e-47 Identities = 212/291 (73%), Gaps = 47/291 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 120777 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGAGCATCACAGACCAATTATTG 120718 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| | |||||||||||||| Sbjct 120717 C-TCAATCT-CGTGCGGCTAGAAGCCGCTTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 120660 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | | || ||| ||||| | | ||||| Sbjct 120659 GTAGTAAAAACTCGCCGACCGAAGTCGGGAGCCTTCGAGATACCATAATTTACGTCTATT 120600 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 120599 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 120540 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 120539 GAACAGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGT 120489 Score = 122 bits (134), Expect = 1e-25 Identities = 91/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 68293 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACAGACCTGTTATTG 68352 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| | |||||||||||||| Sbjct 68353 -CTCAATC-TCGTGCGGCTAGAAGCCGCTTGTCCCTCTAAGAAG 68394 >seq758 Length=6947 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3118 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 3059 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 3058 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 3019 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 3366 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 3308 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 3307 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 3264 >seq2612 Length=243 Score = 84.2 bits (92), Expect = 3e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 243 AACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796767750018